Supplementary material for: "Assessment of linkage disequilibrium patterns between structural variants and single nucleotide polymorphisms in three commercial chicken populations"

Supplementary material for the publication "Assessment of linkage disequilibrium patterns between structural variants and single nucleotide polymorphisms in three commercial chicken populations" The realated preprint can be found at Research Square (https://doi.org/10.21203/rs.3.rs-861830/v1) Supplementary file 1: Supplementary results, tables and figures. Supplementary file 2: MultiQC report. Supplementary file 3: Observer concordance of the visual filtering step. Supplementary file 4: Snakemake workflow and scripts.