Pan Matrix data

The file pan_matrix.txt is a huge table (tab-separated columns) where each row corresponds to a genome and each column to a domain sequences family. The rows are named by the BIOID-code, see map_ecoli.txt to look up the strain names. The columns are named Cluster 1, Cluster 2,...etc. The corresponding Pfam-A domain sequence is given in the file cluster_info.txt (see below). In cell (i,j) in this table you find the number of occurrences that domain sequence j has in genome number i.

pan_matrix.txt 文件是一个庞大的表格（采用制表符分隔的列），其中每一行对应一个基因组，每一列对应一个域序列家族。行由 BIOID 编码命名，详见 map_ecoli.txt 以查找菌株名称。列由聚类 1、聚类 2 等命名。相应的 Pfam-A 域序列在 cluster_info.txt 文件中给出（见下文）。在此表格的单元格 (i,j) 中，您可以找到域序列 j 在基因组 i 中出现的次数。