Population-level faecal metagenomic profiling as a tool to predict antimicrobial resistance in Enterobacterales isolates causing invasive infections: A study across three settings in Cambodia, Kenya, and the UK

Supplementary files include the following output datasets:

1 - "Corrected Gene Counts" (CGCs);
2 - "AB_Matrix_1_or_2";
3 - "AMR-def";
4 - "AMR-all";
5 - "Dataset_For_Bayesian_Model"

Files to produce these datasets are also provided (see input files)

Supplementary files also comprise the results of the Bayesian modelling (See "Steps to reproduce"):

1 - Bayesian Model Comparisons
2 - Bayesian Model Predictions (best model versus null model)