RedCandy_assembly_dataset

Contains seven items:
V. vitis-idaea ssp. vitis-idaea var. 'Red Candy' de novo assembly in fasta format.V. vitis-idaea ssp. vitis-idaea var. 'Red Candy' scaffolded assembly by mapping to the bilberry genome in agp format based on contig names in the de novo assembled genome (V. myrtillus; Wu et al. 2021).V. vitis-idaea ssp. vitis-idaea var. 'Red Candy' scaffolded assembly by mapping to the bilberry genome in fasta format (V. myrtillus; Wu et al. 2021).Annotation of genes/mRNAs associated with the scaffolded genome in gff3 format.Protein sequences from gene annotation in amino acid fasta or faa format.Coding sequences in nucleotide fasta format.Annotation of transposable elements associated with the scaffolded genome in gff3 format.Raw sequences generated in this study are found in NCBI under PRJNA998787: Oxford Nanopore (SRR25468442-SRR25468450), Illumina NovaSeq (SRR25477290)
The contig-level assembly fasta can also be found in NCBI: JAUYVE000000000
Reference: Wu,C., Deng,C., Hilario,E., Albert,N., Lafferty,D., Plunkett,B., Elborough,C., Saei,A., Jaakola,L., Karppinen,K., Grande,A., Kylli,R., Allan,A., Espley,R. and Chagne,D. 2021. A chromosome-scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition. Molecular Ecology Resources, DOI 10.1111/1755-0998.13467