Additional file 2 of Uncovering the genetic mechanisms regulating panicle architecture in rice with GPWAS and GWAS

Additional file 2: Table S1. The sample list and structure information of 406 accessions. Table S2. Significant genes detected using GPWAS and the phenotypes selected for each gene model. Table S3. The QTLs associated with TSNP, GNP, EGNP, PBN, PL, and PN with four different methods. Table S4. List of genes located in the LD block for TSNP, GNP, EGNP, PBN, PL, and PN. Table S5. Overlapped genes related to TSNP, GNP, EGNP, PBN, PN, and PL using GPWAS and GWAS methods. Table S6. Distribution of four haplotypes in subgroups. Table S7. Annotation of all SNPs located in the overlapped genes using SnpEff software. Table S8. Promoter elements anslysis of gene Os01g0140100.