E. coli BW25113 grown on minimal medium with different carbon sources

The goal of this analysis was to perform transcriptome-wide quantification of genes expressed in E.coli BW25113 when it is grown in M9 with 2.2 g/L glycerol, M9 + 3.3 g/L sodium pyruvate, or M9 + 2.2 g/L glycerol + 2 g/L casamino acids. With this data, we aimed to determine the fractional abundance of certain transcripts, and relate that to the fractional abundance of the proteins they code for (see proteomics data in Schmidt et al 2016).