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Clermont validation set

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NIAID Data Ecosystem2026-05-01 收录
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https://zenodo.org/record/10932378
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This is the validation set presented in [1].  It was used to test the validitity of EzClermont.  It includes 125 E. coli genomes where the isolates have had  Clermont phylotypes experimentally determined.  It is presented here as a benchmark set for other tools implementing in silico prediction of Clermont phylotypes.    [1]: Waters NR, Abram F, Brennan F, Holmes A, Pritchard L. Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool. Access Microbiol. 2020 Jun 19;2(9):acmi000143. doi: 10.1099/acmi.0.000143. PMID: 33195978; PMCID: PMC7656184.
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2024-04-05
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