Supplement 1. Data and R code needed to conduct the analysis described in the main text, as well as detailed description of the functional trait data used for calculating functional diversity indices.

File List Ziter_2013_Ecosphere_Analysis.R (MD5: a70d20be760cc94702c81defab37bb1d) LiveTrees.csv (MD5: 1eb43347a5e2e49b3e2ab5e006f6ad19) SnagsIdentified.csv (MD5: 7e51486d1eadfbf7e3a4ab030db36fa4) SnagsUnidentified.csv (MD5: 41cddd111f48d0c8a2e14cfaf70814dd) DWD.csv (MD5: 9c85df5ebea05a0d59c6c88cb14fa828) OrderedSpecies.csv (MD5: 189a0b4fcf6ca5e85a7ba0487bd254a8) Traits.csv (MD5: 596aa39feef4e755f598c8d3fb9510a8) Traits_FDis7.csv (MD5: 31a764843081b78fe4295534bb5ca3cf) Traits_Description.csv (MD5: 6597b6e7b8260ae8c193d0341c123fd2) Description Ziter_2013_Ecosphere_Analysis.R – Annotated R script containing the code necessary to conduct the analysis described in the text LiveTrees.csv – data file containing study site information (including SiteID (the individual plot identifier), transect direction, plot number (from edge (1) to interior (5)), management status, fragment connectivity, and fragment size), tree species ID, diameter at breast height (DBH, for saplings the mean of the DBH class, recorded under “DBH(Biomass)”, was used to calculate biomass), allometric coefficients, and biomass for each individual live tree measured in the field SnagsIdentified.csv – data file containing study site information (including SiteID (the individual plot identifier), transect direction, plot number (from edge (1) to interior (5)), management status, fragment connectivity, and fragment size), tree species ID, diameter at breast height (DBH, for saplings the mean of the DBH class, recorded under “DBH(Biomass)”, was used to calculate biomass), allometric coefficients, and biomass for each snag (dead tree) measured that was identifiable to species SnagsUnidentified.csv – data file containing study site information (including SiteID (the individual plot identifier), transect direction, plot number (from edge (1) to interior (5)), management status, fragment connectivity, and fragment size), diameter at breast height (DBH, for saplings the mean of the DBH class, recorded under “DBH(Biomass)”, was used to calculate biomass), allometric coefficients, and biomass for each snag (dead tree) measured that was not identifiable to species DWD.csv – data file containing site information (including SiteID (the individual plot identifier), transect direction, plot number (from edge (1) to interior (5)), fragment connectivity, and fragment size), and the diameter, decay class, and volume for each piece of downed woody debris measured in the field OrderedSpecies.csv – data file containing an alphabetically ordered list of all tree species found in the study region Traits.csv – data file containing the full set of functional traits for each tree species Traits_FDis7.csv – reduced traits data file containing only the traits used in the final analysis Traits_Description.csv – text file describing the information in the “Traits.csv” and “Traits_FDis7.csv” files, including explanatory codes for the functional traits used to compute functional diversity indices, trait type, transformations and trait weights, and literature sources.