intropolis: exon-exon junctions across publicly available RNA-seq samples on the Sequence Read Archive

All exon-exon junctions detected by Rail-RNA across 21,504 human RNA-seq samples from the Sequence Read Archive, as studied in the paper "Human splicing diversity across the Sequence Read Archive" by Abhinav Nellore, Andrew E. Jaffe, Jean-Philippe Fortin, José Alquicira-Hernández, Leonardo Collado-Torres, Siruo Wang, Robert A. Phillips III, Nishika Karbhari, Kasper D. Hansen, Ben Langmead, and Jeffrey T. Leek. File formats are described at http://intropolis.rail.bio .

本数据集包含Rail-RNA在取自序列读取存档（Sequence Read Archive）的21504个人类RNA测序（RNA-seq）样本中所检测到的全部外显子-外显子剪接接点（exon-exon junctions）。该数据集对应Abhinav Nellore等人发表于论文《跨序列读取存档的人类剪接多样性（Human splicing diversity across the Sequence Read Archive）》的研究工作，论文作者包括Abhinav Nellore、Andrew E. Jaffe、Jean-Philippe Fortin、José Alquicira-Hernández、Leonardo Collado-Torres、Siruo Wang、Robert A. Phillips III、Nishika Karbhari、Kasper D. Hansen、Ben Langmead及Jeffrey T. Leek。该数据集的文件格式说明可访问网址http://intropolis.rail.bio查看。

搜集汇总

背景与挑战

背景概述

该数据集汇总了21,504个人类RNA-seq样本中的外显子-外显子连接信息，用于研究人类剪接多样性，数据来源于Sequence Read Archive并通过Rail-RNA工具检测。