Supplementary Material - NeighborFinder paper

NeighborFinder is an R package that implements a local network inference method designed for microbiome data. It enables the targeted discovery of direct neighbors around a species of interest. This repository contains the files and code needed to reproduce the figures presented in the article: "NeighborFinder: an R package inferring local microbial network around a species of interest" (Sola, M. et al., 2025). It also contains the intermediate files needed to evaluate NeighborFinder's performance, as well as the corresponding R script for calculating them from semi-synthetic datasets.