RDP taxonomic training data formatted for DADA2 (RDP release 19 - update 2023-08-23)
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https://zenodo.org/record/14168770
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资源简介：
These DADA2-formatted training fasta files were derived from the Ribosomal Database Project's Training Set 19 and the 2023-08-23 release of the RDP database. https://sourceforge.net/projects/rdp-classifier/files/RDP_Classifier_TrainingData/
These fastas were generated by the following commands using the dada2 R package version 1.35.4:
## RDP data: https://sourceforge.net/projects/rdp-classifier/files/RDP_Classifier_TrainingData/
path <- "~/tax/rdp/v19"fn.out.rdp <- "~/Desktop/rdp_19_toGenus_trainset.fa.gz"dada2:::makeTaxonomyFasta_RDP(file.path(path, "trainset19_072023_speciesrank.fa"), file.path(path, "trainset19_db_taxid.txt"), fn.out.rdp, include.species=FALSE, compress=TRUE)
fn.out.spc.rdp <- "~/Desktop/rdp_19_toSpecies_trainset.fa.gz"dada2:::makeTaxonomyFasta_RDP(file.path(path, "trainset19_072023_speciesrank.fa"), file.path(path, "trainset19_db_taxid.txt"), fn.out.spc.rdp, include.species=TRUE, compress=TRUE)
创建时间：
2024-11-15
