MicroTrait annotations for GlobDB release 232

This dataset contains microTrait annotations for all references genomes available in GlobDB release 232. Input files:genomes: https://fileshare.lisc.univie.ac.at/globdb/globdb_r232/globdb_r232_genome_fasta.tar.gzprotein sequences: https://fileshare.lisc.univie.ac.at/globdb/globdb_r232/globdb_r232_protein_fasta.tar.gzanvioDB: https://fileshare.lisc.univie.ac.at/globdb/globdb_r232/globdb_r232_anvio_dbs.tar.gzThe anvio database was used to export gene-level nucleotide sequence files with anvi-get-sequences-for-gene-calls. For annotation the extract.traits() function in microTrait (1.0.0) was run in R 4.5.1 based on protein sequences. Individual (genome-level) output files are in compressed folders according to GlobDB dir structure: e.g. R232CHUNK000.tar.gz Combined matrices are in the rds files prefixed with GlobDB_Note all files were joined with 3 columns genome_length, mingentime and ogt which can be removed (only mingentime contains values). For information on the output files refer to the microtrait documentation.R scripts and a snakemake workflow utilized to generate the dataset are attached, but will have to be modified to be functional on other systems.