Bovine milk microbiome sequence data
收藏DataCite Commons2020-08-31 更新2024-08-25 收录
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https://figshare.com/articles/Bovine_milk_microbiome_sequence_data/5705314/1
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资源简介：
MiSeq sequence data plus additional files of processed data.Paired end (PE) DNA sequence files from MiSeq sequencing of 16s rRNA gene V4 PCR amplicons from 21 dairy cow milk samples.<br><br>The filenames ending in qf.fastq.gz are fastq files that have been quality filtered using Trimmomatic.<br>Files beginning AEEYU_PCR-Neg contain sequence from PCR and MiSeq sequence steps where water was used in place of microbial DNA from milk (all other ingredients the same as +DNA samples).<br>Sample identifiers in the fastq filenames refer to these cows:ID cowmsb001334 c400msb001335 c604msb001336 c644msb001337 c659msb001338 c666msb001339 c675msb001340 c690msb001342 c774msb001343 c807msb001344 c854msb001345 c1029msb001347 c5601msb001348 c5621msb001349 c6808msb001350 c8192msb001351 c7905msb001353 c8421msb001354 c9501msb001355 c9504msb001356 c9510msb001357 c9536<br>Also a file of the unique (dereplicated) 16s v4 sequences closely related to Faecalibacterium, together with the list and membership of swarm clusters of those sequences and a fasta file of the swarm seeds. Also 2 sample x abundance tables (space delimited) for cows vs microbial families and cows vs Greengenes OTU.<br>
提供机构：
figshare
创建时间：
2019-08-02
