Gene trees and alignments for phylogenomic analysis supporting transfer of Coniothyrium glycines to the genus Aristastoma
收藏资源简介:
Gene trees and alignments for phylogenomic analysis included in the manuscript submitted to Mycologia as "Phylogenomic analysis supports the transfer of Coniothyrium glycines, a soybean pathogen and USDA Select Agent, to the genus Aristastoma" Repository includes two datasets, both generated through the BUSCO_phylogenomics pipeline. Both include a folder of individual gene trees for the BUSCO genes annotated in each analysis, a file with all the concatenated trees ('ALL.tree'), a superalignment of all the BUSCO proteins with a partition file. The 'ALL.tree' file is easily compatible with ASTRAL-IV and the supermatrix with the partition with IQ-tree, for example. Output trees and code to generate figures included in the publication are available in the associated github repo: https://github.com/ngreatens/Aristastoma. Necessary context is provided in the publication. Reach out to nicholasgreatens@gmail.com with questions.



