Comparison of different community composition analysis methods on rank species.

*Detected at 30 h.**No analysis performed at 30 h.***Only phylogenetic marker gene(s) sequences available in databases.Species are only considered as present in the ecosystem if they could be detected by all five taxonomic profiling tools. The relative species abundances, predicted by the different classification tools, are expressed as a range that represent the lowest and highest values obtained. For the other methods, the presence of a species is denoted by “X”. A.: Acetobacter; E.: Escherichia; En.: Enterobacter; Er.: Erwinia; G.: Gluconobacter; Ga.: Gluconacetobacter; K.: Klebsiella; L.: Lactobacillus; Leuc.: Leuconostoc; Lc.: Lactococcus; O.: Oenococcus; P.: Pediococcus; Pe.: Pectobacterium; S.: Salmonella; St.: Streptococcus; T.: Tatumella.