Processed per-frame and swim bout data for Constant Temperature dataset

ConstantTemperature_ProcessedDataframes_Pickle.zip

For each fish in the gradient experiments there is one file named according to .nwb&&_fish.pkl and one file named according to .nwb&&_bout.pkl. Each of these files is a pickled pandas dataframes (to be loaded via pandas.read_pickle ). The *_fish files contain frame-by-frame information about position, speed and heading while the *_bout files contain per-swim-bout start/end information as well as kinematics and states.

Fish dataframe structure

Temperature
X Position
Y Position
Heading
Raw X
Raw Y
Instant speed

The temperature at the fish position at the given frame
The filtered X position of the fish at the given frame in mm
The filtered Y position of the fish at the given frame in mm
The heading of the fish at the given frame in radians
The raw tracked X Position
The raw tracked Y Position
The instantaneous speed of the fish at the given frame in mm/s

Bout dataframe structure

State
Gradient direction
Original index
Start
Stop
Peak speed
Displacement
Angle change
IBI

The annotated swim mode
The cosine of the angle of the bout vector with respect to the y direction in the chambe (equivalent to gradient direction in gradient experiments)
The original index of the bout (since bouts close to the arena edge were filtered out)
The start camera frame of the bout
The end camera frame of the bout
The maximal speed in mm/s reached during the bout
The displacement of the bout in mm
The angle change of the bout in radians
The waiting time since the previous bout (interbout interval) in ms

Temperature
Prev Delta T
1s Delta T
Delta X
Delta Y
Prev angle change
X Position
Y Position
Heading

The temperature at the start of the bout
The temperature change across the previous bout
The temperature change across the preceding second
The movement in the X direction in mm
The movement in the Y direction in mm
The angle change of the previous bout
The x position at the start of the bout
The y position at the start of the bout
The fish heading at the start of the bout