Supplemental Material for Miller et al., 2019

Figure S1. Maximization of collinearity in the final consensus map from male and female informative markers. Figure S2. Linkage map assignment heat map of recombination fractions and LOD scores for scaffolds with sufficient markers for mapping. Figure S3. LGs that differed between the two sex-specific maps and the order and orientation of the consensus map (ALLMAPs) scaffolds in closely related platyfish and medaka. Figure S4. Platyfish and medaka dot-plots for each killifish LG. Figure S5. Zebrafish ortholog dot-plots. Figure S6. Dot plots for each human (right, 1-23) and spotted gar (left, 1-29) chromosome.Figure S7. Circos plots of fusions and duplicated chromosomes. File S1. - BARCODESFile S2. - CUSTOM PERL SCRIPTSFile S3. - CUSTOM R SCRIPTSFile S4. - ADDRESS FOR GFFs ALL TAXAFile S5. - MICROSAT MAP TABLEFile S6. – CIRCOS HOMOLOGY

图S1：从男性和女性信息标记中最终一致性图谱中最大化共线性。图S2：具有足够标记进行映射的支架重组分数和LOD分数的连锁图谱分配热图。图S3：在两个性别特异性图谱中存在差异的LGs以及紧密相关的大菱鲆和斑马鱼的共识图谱（ALLMAPs）支架的顺序和方向。图S4：每条杀鲶LG的菱形图。图S5：斑马鱼直系同源菱形图。图S6：每个人类（右侧，1-23）和斑点鲟（左侧，1-29）染色体的点图。图S7：融合和重复染色体的Circos图。文件S1：- 条形码文件。文件S2：- 定制Perl脚本。文件S3：- 定制R脚本。文件S4：- GFFs所有物种的地址。文件S5：- 微卫星图谱表。文件S6：- CIRCOS同源图。