Supplementary Tables S1-S36 from Preexisting Skin-Resident CD8 and γδ T-cell Circuits Mediate Immune Response in Merkel Cell Carcinoma and Predict Immunotherapy Efficacy

Supplementary Table S1. Patient cohort: Clinical data and assays Supplementary Table S2. Sample cohort: Clinical data and assays Supplementary Table S3. Pre-ICB bulk RNA-seq cohort, 63 samples Supplementary Table S4. Pre-Post ICB matched bulk RNA-seq, 28 samples, 14 patient pairs Supplementary Table S5. Number of reads for each bulk RNA-seq sample (85 samples) Supplementary Table S6. Tissue single-cell RNA-seq quality control and sample metadata (54 samples) Supplementary Table S7. Blood single-cell RNA-seq quality control and sample metadata (55 samples) Supplementary Table S8. Multiplex immunofluorescence sample cohort (44 samples) Supplementary Table S9. GeoMx sample cohort (15 samples) Supplementary Table S10. CosMx sample cohort (13 samples) Supplementary Table S11: Genes differentially expressed between MCC that respond to anti-PD-1/PD-L1 therapy (n=31) and MCC that do not respond to anti-PD-1/PD-L1 therapy (n=32) in the pre-ICB cohort (n=63). Supplementary Table S12. Enrichr results of differentially expressed genes (FDR