kallisto index file of humanV.48 (Gencode) transcriptome (https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_48/gencode.v48.pc_transcripts.fa.gz)

Reference source: GENCODE Release 48 (Human, GRCh38) Input FASTA: gencode.v48.pc_transcripts.fa.gz (protein-coding transcripts) Index output: gencode_H_v48.idx (used for quantification in Kallisto) Purpose: This index enables rapid alignment-free quantification of RNA-seq reads against the annotated transcriptome.