rarefaction.200b.windows

Transcriptome coverage of the mm10 mouse reference genome. Computed from transcriptome alignments of three populations of Mus musculus domesticus (AH from Iran, CB from Germany, MC from France), two populations of Mus musculus musculus (KH from Kazakhstan, WI from Austria), Mus musculus castaneus (TA), Mus spicilegus (SC), Mus spretus (SP), Mus mattheyi (MA) and Apodemus uralensis (AP). This is a summary over three tissues (brain, liver, testis) for each of the taxa, resampled to obtain coverage rarefaction estimates by taxon and by fraction of data sequenced. Number in columns indicates the percentage, with total representing the maximum available sampling for each taxon. Each of the rows on this file corresponds to the rows of the transcriptome file, present together in this submission, and must be analyzed together to obtain genomic position information. Features were generated with bedtools, converted into SAF format, and extracted from BAM alignments using the featureCounts suite.