Spades E coli assembly visualised with bandage
收藏Figshare2015-10-30 更新2026-04-29 收录
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https://figshare.com/articles/dataset/Spades_E_coli_assembly_visualised_with_bandage/1589818
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While preparing for a course on de novo genome assembly, I tried out the excellent Bandage program for viewing assembly graphs. One spades assembly stuck out, as it showed a 'knot' of short contigs. Inspection of the sequencing of these contigs showed them to be derived from the rRNA loci of the genome (rRNA and tRNA genes). After I posted an image of the graph on twitter, a fellow researcher asked me for a citable copy of the figure. This figshare entry is meant to provide just that. I've also included the fastg file so those interested can load it into bandage.
创建时间:
2015-10-30



