Transposable Elements prediction and annotation in the C. elegans genome

This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configuration files (with parameters) used for this analysis and the in-house python script used to identify canonical TE annotations using TE consensus library and draft TE annotation (REPET output). Download: In order to preserve the folder and file tree structure (easier to reproduce the analyses), select all the files and click on download (original format). The download of a .zip archive should start. Once downloaded, extract the contents of the archive.