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mRNA and DNAm references for colon

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Figshare2021-04-13 更新2026-04-28 收录
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https://figshare.com/articles/dataset/mRNA_and_DNAm_references_for_colon/14399465
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The data contains a 381-marker expression reference and a 104-marker DNAm reference for Colon, which can be used to estimate cell type fractions of endothelial cells, epithelial cells, lymphocytes, myeloid cells and stromal cells in Colon tissue with EpiSCORE framework.Colon_Expref.csvA scRNAseq expression reference for Colon. Each row is a marker gene (in gene symbol) and each column is a cell type. For each marker gene, the value of the reference matrix is the median expression level for each type of cells in scRNAseq data.Colon_Mref.csvA DNAm reference for Colon. Each row is a marker gene (in entrezID) and each column is a cell type. The last column is the weight for each marker. The value of the matrix is the imputed DNAm level from expression reference.
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2021-04-13
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