Global Bee Interaction Data
收藏资源简介:
Last modified: December 17, 2025 IntroductionThis dataset comprises all bee interactions indexed by Global Biotic Interactions (GloBI; Poelen et al. 2014). It is published quarterly by the Big Bee Project (Seltmann et al. 2021) to summarize all available knowledge about bee interactions from natural history collections, community science observations (i.e., iNaturalist), and the literature. Interactions include flower visitation, parasitic interactions (mite, viral), lecty, and many others. Data DescriptionPlease see the integration process page to better understand how Global Biotic Interactions combines datasets from various sources. The complete interaction dataset for all species can be accessed via https://www.globalbioticinteractions.org/data. Data is filtered for unique records based on the interaction description and source citation. Archives contain full data records and unique filtered records in tab-delimited format. Dataset column name definitions https://api.globalbioticinteractions.org/interactionFields or https://api.globalbioticinteractions.org/interactionFields Duplicate records occur in the database because more than one provider shares information. This is most frequently occuring in museum specimen data and duplicates can be identified evaluating the institutionCode, collectionCode and catalogNumber fields. The file catalogNumber_counts.tsv groups records by these three fields for this dataset, but does not filter out duplicate records. Additionally, this dataset includes the citation information provided by the data publisher. The provided sourceCitation may not include information about the primary provider (often the natural history collection) the specimen data originates and the catalogNumber should be referenced to understand the original source of the data. The counts and metrics include exact duplicates (found in the interactions.tsv file). globi-bees-filtered_file.tsv.gz file removes exact duplicates and currently totals 1,868,619 records. If you know of a missing dataset, or wish to share your dataset, please contact us! Metrics Date Total bee records 07-17-2020 232,906 01-24-2021 257,738 11-17-2021 226,160 06-01-2022 286,818 11-07-2022 429,308 01-18-2024 842,819 07-03-2024 1,109,057 01-09-2025 1,223,768 11-25-2025 2,480,473 12-16-2025 3,030,355 Date Andrenidae Apidae Colletidae Halictidae 07-17-2020 73,463 106,222 20,821 58,880 01-24-2021 77,824 120,919 21,376 63,945 11-17-2021 25,535 134,517 10,568 43,070 06-01-2022 78,016 144,827 20,409 64,054 11-07-2022 84,172 171,378 30,792 79,155 01-18-2024 166,473 334,224 63,847 171,931 07-03-2024 289,400 371,953 83,337 190,562 01-09-2025 204,565 686,195 70,724 241,856 11-25-2025 269,191 1,509,768 129,763 386,203 12-16-2025 277,549 2,015,320 132,253 413,572 Date Megachilidae Melittidae Stenotritidae 07-17-2020 44,449 2,511 23 01-24-2021 48,856 2,624 18 11-17-2021 37,001 995 9 06-01-2022 54,516 2,994 18 11-07-2022 61,391 2,396 24 01-18-2024 100,814 5,088 442 07-03-2024 162,587 4,964 438 01-09-2025 126,113 5,928 441 11-25-2025 174,935 9,764 849 12-16-2025 180,494 10,318 849 Included files The counts and metrics include exact duplicates (found in the interactions.tsv file). globi-bees-filtered_file.tsv.gz file removes exact duplicates and currently totals 1,868,619 records. filter_and_count_bee_families.sh - script for separating bee records into family and counting number of records for each family citation-count.sh - script for counting citations unique_citations.tsv - data sources and citation counts for this dataset. Same information in the ReferenceCitation table below. family_counts.tsv - counts by family globi-bees-filtered_file.tsv.gz - list of all bee interaction data indexed on Global Biotic Interactions from GloBI version 2025-Nov-25 produced by [filter_and_count_bee_families.sh]. interactions.tsv.gz - archive of the full Global Biotic Interaction dataset on November 25, 2025. Downloaded from https://www.globalbioticinteractions.org Interaction Sources Below is a list of sources that contributed to this dataset, along with raw counts of unique interactions and links to the corresponding digital archives and reviews. These datasets are indexed and reviewed by Global Biotic Interactions (GloBI) using automated, reproducible workflows that extract species-interaction records, reconcile taxonomic names against authoritative catalogs, and summarize the findings. Each review produces a versioned digital archive to ensure long-term preservation and to document data provenance. For details, see the Methods section within each linked archive. ReferenceCitation Count http://iNaturalist.org is a place where you can record what you see in nature, meet other nature lovers, and learn about the natural world. 287441 Reji Chacko, M., Albouy, C., Altermatt, F., Brändle, M., Casanelles Abella, J., Boussange, V., Campell, F., Ellis, W. N., Fopp, F., Gossner, M. M., Ho., H., Joss, A., Kipf, P., Neff, F., Petrović, A., Prié, V., Tomanović, Ž., Zimmerli, N., Pellissier, L. (2024). trophiCH v1 - a food web for Switzerland. EnviDat. https://www.doi.org/10.16904/envidat.467. 266611 USGS Biodiversity Information Serving Our Nation (BISON) IPT 258683 ecdysis - a portal for live-managing arthropod occurrence data 182755 Digital Bee Collections Network, 2014 (and updates). Version: 2015-03-18. National Science Foundation grant DBI 0956388; PBI: Phytophagous Insects as a Model Group for Documenting Planetary Biodiversity (Insecta: Heteroptera: Miridae: Orthotylinae, Phylinae). Version: 08 Mar 2016. National Science Foundation grant DBI#0316495; Tri-Trophic Thematic Collection Network, 2014 (and updates). Version: 08 Mar 2016. http://tcn.amnh.org/. National Science Foundation grant(s) EF#1115081, EF#1115103, EF#1115080, EF#1115144, EF#1115191, EF#1115104, EF#1115115 113301 University of Kansas Natural History Museum - Snow Entomological Museum Collection 112041 Lanuza et al. (2025), EuPPollNet: A European Database of Plant-Pollinator Networks. Global Ecol Biogeogr, 34: e70000. https://doi.org/10.1111/geb.70000 99024 Symbiota Collections of Arthropods Network (SCAN) 79213 Frost Entomological Museum, Pennsylvania State University 62736 Balfour, N.J., Castellanos, M.C., Goulson, D., Philippides, A. and Johnson, C., 2022. DoPI: The Database of Pollinator Interactions. Ecology, 103, e3801. 41298 PaDIL Bee records from the Pests and Diseases Image Library, http://www.padil.gov.au. 28517 Guzman, Laura Melissa; Kelly, Tyler; Elle, Elizabeth, 2022, "A dataset for pollinator diversity and their interactions with plants in the Pacific NorthWest", https://doi.org/10.5683/SP3/WTEZNH, Borealis, V1 27114 University of Michigan Museum of Zoology Insect Division. Full Database Export 2020-11-20 provided by Erika Tucker and Barry Oconner. 24564 Carril OM, Griswold T, Haefner J, Wilson JS. (2018) Wild bees of Grand Staircase-Escalante National Monument: richness, abundance, and spatio-temporal beta-diversity. PeerJ 6:e5867 https://doi.org/10.7717/peerj.5867 23727 A. Thessen. 2014. Species associations extracted from EOL text data objects via text mining. 18770 Pensoft Darwin Core Archives available via Integrated Publication Toolkit 18003 Dorey, J.B., Fischer, E.E., Chesshire, P.R. et al. A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Sci Data 10, 747 (2023). https://doi.org/10.1038/s41597-023-02626-w 17603 Vandame R, Mérida J, Sagot P, Madrigal González D, Bedolla García B Y, González-Vanegas P A, Cultid-Medina C A, Barrios J M (2023). Potential host plant records recovered from ECOAB wild bee collection, Mexico. Version 1.10. Comisión nacional para el conocimiento y uso de la biodiversidad. 17088 Schwarz, Benjamin et al. (2021). Data from: Temporal scale-dependence of plant-pollinator networks [Dataset]. Dryad. https://doi.org/10.5061/dryad.qz612jmbp 15763 Pensoft Darwin Core Archives with associateTaxa columns 10211 American Museum of Natural History Hymenoptera 9104 Web of Life. http://www.web-of-life.es . 8681 Aubouin, L., Genoud, D., Givord-Coupeau, B. et al. BeeFunc, a comprehensive trait database for French bees. Sci Data 12, 1302 (2025). https://doi.org/10.1038/s41597-025-05626-0 8670 University of Michigan Museum of Zoology, Division of Insects 6600 Allen-Perkins, Alfonso, Magrach, Ainhoa, Dainese, Matteo, Garibaldi, Lucas A., Kleijn, David, Rader, Romina, Reilly, James R., et al. 2022. "CropPol: A Dynamic, Open and Global Database on Crop Pollination." Ecology 103(3): e3614. https://doi.org/10.1002/ecy.3614 6329 Purdue Entomological Research Collection 6290 Redhead, J.W.; Coombes, C.F.; Dean, H.J.; Dyer, R.; Oliver, T.H.; Pocock, M.J.O.; Rorke, S.L.; Vanbergen, A.J.; Woodcock, B.A.; Pywell, R.F. (2018). Plant-pollinator interactions database for construction of potential networks. NERC Environmental Information Data Centre. https://doi.org/10.5285/6d8d5cb5-bd54-4da7-903a-15bd4bbd531b 6178 https://mangal.io - the ecological interaction database. 5620 @article{Hale_2024, title={A highly resolved network reveals the role of terrestrial herbivory in structuring aboveground food webs}, volume={379}, ISSN={1471-2970}, url={http://dx.doi.org/10.1098/rstb.2023.0180}, DOI={10.1098/rstb.2023.0180}, number={1909}, journal={Philosophical Transactions of the Royal Society B: Biological Sciences}, publisher={The Royal Society}, author={Hale, Kayla R. S. and Curlis, John David and Auteri, Giorgia G. and Bishop, Sasha and French, Rowan L. K. and Jones, Lance E. and Mills, Kirby L. and Scholtens, Brian G. and Simons, Meagan and Thompson, Cody and Tourville, Jordon and Valdovinos, Fernanda S.}, year={2024}, month=jul } 5535 Clint Otto, Russ Bryant, and Ned H. Euliss Jr., 2020, The U.S. Geological Survey Pollinator Library Dataset: U.S. Geological Survey. https://doi.org/10.5066/P9DSS3VL 5316 University of Colorado Museum of Natural History Entomology Collection 4688 National Database Plant Pollinators. Center for Plant Conservation at San Diego Zoo Global. Accessed via https://saveplants.org/national-collection/pollinator-search/ on 2020-06-05. 4663 Seltmann, K., Van Wagner, J., Behm, R., Brown, Z., Tan, E., & Liu, K. (2020). BID: A project to share biotic interaction and ecological trait data about bees (Hymenoptera: Anthophila). UC Santa Barbara: Cheadle Center for Biodiversity and Ecological Restoration. Retrieved from https://escholarship.org/uc/item/1g21k7bf 4284 Eardley C, Coetzer W. 2016. Catalogue of Afrotropical Bees. 4176 Arizona State University Hasbrouck Insect Collection 3709 Mycology Collections Data Portal (MyCoPortal). https://mycoportal.org 3697 Maiorano, L., Montemaggiori, A., Ficetola, G.F., O’Connor, L. & Thuiller, W. (2020), Data from: Tetra-EU 1.0: a species-level trophic meta-web of European tetrapods, Dryad, Dataset, https://doi.org/10.5061/dryad.jm63xsj7b hash://md5/40b3d2de829d5f6d98ab71b0b5aa87fd 3619 University of New Hampshire Donald S. Chandler Entomological Collection 3140 CaraDonna, P.J. 2020. Temporal variation in plant-pollinator interactions, Rocky Mountain Biological Laboratory, CO, USA, 2013 - 2015 ver 1. Environmental Data Initiative. https://doi.org/10.6073/pasta/27dc02fe1655e3896f20326fed5cb95f (Accessed 2021-04-16). 3124 LaManna, JA, Burkle, LA, Belote, RT, Myers, JA. Biotic and abiotic drivers of plant–pollinator community assembly across wildfire gradients. J Ecol. 2020; 00: 1– 14. https://doi.org/10.1111/1365-2745.13530 . 3120 Ollerton, J., Trunschke, J. ., Havens, K. ., Landaverde-González, P. ., Keller, A. ., Gilpin, A.-M. ., Rodrigo Rech, A. ., Baronio, G. J. ., Phillips, B. J., Mackin, C. ., Stanley, D. A., Treanore, E. ., Baker, E. ., Rotheray, E. L., Erickson, E. ., Fornoff, F. ., Brearley, F. Q. ., Ballantyne, G. ., Iossa, G. ., Stone, G. N., Bartomeus, I. ., Stockan, J. A., Leguizamón, J., Prendergast, K. ., Rowley, L., Giovanetti, M., de Oliveira Bueno, R., Wesselingh, R. A., Mallinger, R., Edmondson, S., Howard, S. R., Leonhardt, S. D., Rojas-Nossa, S. V., Brett, M., Joaqui, T., Antoniazzi, R., Burton, V. J., Feng, H.-H., Tian, Z.-X., Xu, Q., Zhang, C., Shi, C.-L., Huang, S.-Q., Cole, L. J., Bendifallah, L., Ellis, E. E., Hegland, S. J., Straffon Díaz, S., Lander, T. A. ., Mayr, A. V., Dawson, R. ., Eeraerts, M. ., Armbruster, W. S. ., Walton, B. ., Adjlane, N. ., Falk, S. ., Mata, L. ., Goncalves Geiger, A. ., Carvell, C. ., Wallace, C. ., Ratto, F. ., Barberis, M. ., Kahane, F. ., Connop, S. ., Stip, A. ., Sigrist, M. R. ., Vereecken, N. J. ., Klein, A.-M., Baldock, K. ., & Arnold, S. E. J. . (2022). Pollinator-flower interactions in gardens during the COVID-19 pandemic lockdown of 2020. Journal of Pollination Ecology, 31, 87–96. https://doi.org/10.26786/1920-7603(2022)695 3039 Robert L. Minckley San Bernardino Valley from the year 2000 to 2011. 2831 Harvard University M, Morris P J (2021). Museum of Comparative Zoology, Harvard University. Museum of Comparative Zoology, Harvard University. 2777 Giselle Muschett & Francisco E. Fontúrbel. 2021. A comprehensive catalogue of plant – pollinator interactions for Chile 2252 Cohen JM, Sauer EL, Santiago O, Spencer S, Rohr JR. 2020. Divergent impacts of warming weather on wildlife disease risk across climates. Science. doi:10.1126/science.abb1702 2068 Sarah E. Miller. 07/06/2017. Information extracted from dataset https://www.idigbio.org/portal/recordsets/db4bb0df-8539-4617-ab5f-eb118aa3126b. 2038 International Council for the Exploration of the Sea (ICES). Year of The Stomach Datasets. 1884 http://gomexsi.tamucc.edu 1815 @article {Keck2025.01.24.634685, author = {Keck, Fran{\c c}ois and Broadbent, Henry and Altermatt, Florian},title = {Extracting massive ecological data on state and interactions of species using large language models},year = {2025},doi = {10.1101/2025.01.24.634685},journal = {bioRxiv}} 1812 Fricke, E.C., Svenning, J. Accelerating homogenization of the global plant–frugivore meta-network. Nature 585, 74–78 (2020). https://doi.org/10.1038/s41586-020-2640-y 1766 Klompen H, Johnson N (2018). Ohio State Acarology Laboratory (OSAL), Ohio State University. Museum of Biological Diversity, The Ohio State University. Accessed via https://mbd-db.osu.edu/hol/taxon_name/05fbf4bb-f8e1-404e-a27c-759d345aa4d0 on 2023-11-06 hash://sha256/fb23140e60f4889de35ae174b2570cf294012bff4f2c8c419c292af51c98c25f 1654 Grundler MC (2020) SquamataBase: a natural history database and R package for comparative biology of snake feeding habits. Biodiversity Data Journal 8: e49943. https://doi.org/10.3897/BDJ.8.e49943 1619 Brose, U. (2018). GlobAL daTabasE of traits and food Web Architecture (GATEWAy) version 1.0 [Data set]. German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig. https://doi.org/10.25829/IDIV.283-3-756 1510 Florida State Collection of Arthropods 1502 Sarah E Miller. 6/19/2015. Species associations manually extracted from datasets https://www.nceas.ucsb.edu/interactionweb/resources.html. 1431 Rubinigg M. 2023 Data on economic dependence of pollination by animals in crops as well as observations of pollinators on plant species, inon economic dependence of pollination by animals in crops as well as observations of pollinators on plant species, in particular crops. EU Pollinator Hub. [2025-08-28] app.pollinatorhub.eu 1351 Magrach, Ainhoa et al. (2017), Data from: Plant-pollinator networks in semi-natural grasslands are resistant to the loss of pollinators during blooming of mass-flowering crops, Dryad, Dataset, https://doi.org/10.5061/dryad.k0q1n 1091 Wardeh, M., Risley, C., McIntyre, M. et al. Database of host-pathogen and related species interactions, and their global distribution. Sci Data 2, 150049 (2015). https://doi.org/10.1038/sdata.2015.49 1057 Sarah E Miller. 4/18/2016. Species associations from Wardeh, M. et al. Database of host-pathogen and related species interactions, and their global distribution. Sci. Data 2:150049 doi: 10.1038/sdata.2015.49 (2015) 1057 Sarah E Miller. 5/30/2016. Interations from various papers. 958 University of California Santa Barbara Invertebrate Zoology Collection 945 Ed Baker; Ian J. Kitching; George W. Beccaloni; Amoret Whitaker et al. (2016). Dataset: NHM Interactions Bank. Natural History Museum Data Portal (data.nhm.ac.uk). https://doi.org/10.5519/0060767 873 Del Risco, A.A., Montoya, Á.M., García, V. et al. Data synthesis and dynamic visualization converge into a comprehensive biotic interaction network: a case study of the urban and rural areas of Bogotá D.C.. Urban Ecosyst (2021). https://doi.org/10.1007/s11252-021-01133-3 870 The International Barcode of Life Consortium (2016). International Barcode of Life project (iBOL). Occurrence dataset https://doi.org/10.15468/inygc6 857 Ollerton J, Liede-Schumann S, Endress ME, Meve U, Rech AR, Shuttleworth A, Keller HA, Fishbein M, Alvarado-Cárdenas LO, Amorim FW, Bernhardt P, Celep F, Chirango Y, Chiriboga-Arroyo F, Civeyrel L, Cocucci A, Cranmer L, da Silva-Batista IC, de Jager L, Deprá MS, Domingos-Melo A, Dvorsky C, Agostini K, Freitas L, Gaglianone MC, Galetto L, Gilbert M, González-Ramírez I, Gorostiague P, Goyder D, Hachuy-Filho L, Heiduk A, Howard A, Ionta G, Islas-Hernández SC, Johnson SD, Joubert L, Kaiser-Bunbury CN, Kephart S, Kidyoo A, Koptur S, Koschnitzke C, Lamborn E, Livshultz T, Machado IC, Marino S, Mema L, Mochizuki K, Morellato LPC, Mrisha CK, Muiruri EW, Nakahama N, Nascimento VT, Nuttman C, Oliveira PE, Peter CI, Punekar S, Rafferty N, Rapini A, Ren ZX, Rodríguez-Flores CI, Rosero L, Sakai S, Sazima M, Steenhuisen SL, Tan CW, Torres C, Trøjelsgaard K, Ushimaru A, Vieira MF, Wiemer AP, Yamashiro T, Nadia T, Queiroz J, Quirino Z. The diversity and evolution of pollination systems in large plant clades: Apocynaceae as a case study. Ann Bot. 2019 Jan 23;123(2):311-325. doi: 10.1093/aob/mcy127. PMID: 30099492; PMCID: PMC6344220. 761 Illinois Natural History Survey Insect Collection 760 Poelen, J. H. (2024). A biodiversity dataset graph: Biological Associations in TaxonWorks hash://sha256/e4a47c067d6c125da60c9a1b92b5eecdea539cb8666cd3aed99db347ae5b8ed0 hash://md5/686007de79cc2a49ab23fd3debe56e3f [Data set]. Zenodo. https://doi.org/10.5281/zenodo.11151783 721 Texas A&M University Insect Collection 711 Graystock, P., Ng, W.H., Parks, K. et al. Dominant bee species and floral abundance drive parasite temporal dynamics in plant-pollinator communities. Nat Ecol Evol 4, 1358–1367 (2020). https://doi.org/10.1038/s41559-020-1247-x 709 Natural History Collections managed by Arctos (https://arctosdb.org) accessed via https://vertnet.org . 703 Russo, Laura; Fitzpatrick, Una; Larkin, Michelle et al. (2022). Database of plant-flower visitor interactions from Ireland [Dataset]. Dryad. https://doi.org/10.5061/dryad.kwh70rz47 688 Classen, Alice; Steffan-Dewenter, Ingolf (2020): Plant-pollinator interactions along an elevational gradient on Mt. Kilimanjaro. PANGAEA, https://doi.org/10.1594/PANGAEA.911390 634 A review of the status of web-based African Plant-Pollinator Interaction data. 627 Scott L. Gardner and Gabor R. Racz (2021). University of Nebraska State Museum - Parasitology. Harold W. Manter Laboratory of Parasitology. University of Nebraska State Museum. 607 National Museum of Natural History, Smithsonian Institution IPT RSS Feed 590 Raymond, B., Marshall, M., Nevitt, G., Gillies, C., van den Hoff, J., Stark, J.S., Losekoot, M., Woehler, E.J., and Constable, A.J. (2011) A Southern Ocean dietary database. Ecology 92(5):1188. Available from http://dx.doi.org/10.1890/10-1907.1 . Data set supplied by Ben Raymond. 563 Sarah E Miller. 6/22/2015. Species associations manually extracted from datasets https://www.nceas.ucsb.edu/interactionweb/resources.html. 555 RCPol: Online Pollen Catalogs Network. 2016. https://rcpol.org.br/ 492 Pinnegar, J.K. (2014). DAPSTOM - An Integrated Database & Portal for Fish Stomach Records. Version 4.7. Centre for Environment, Fisheries & Aquaculture Science, Lowestoft, UK. February 2014, 39pp. 480 Pardee, G.L., Ballare, K.M., Neff, J.L., Do, L.Q., Ojeda, D., Bienenstock, E.J., Brosi, B.J., Grubesic, T.H., Miller, J.A., Tong, D. and Jha, S., 2023. Local and Landscape Factors Influence Plant-Pollinator Networks and Bee Foraging Behavior across an Urban Corridor. Land, 12(2), p.362. https://www.mdpi.com/2073-445X/12/2/362 459 The Albert J. Cook Arthropod Research Collection 437 Sarah E Miller. 6/25/2015. Species associations manually extracted from Robertson, C. 1929. Flowers and insects: lists of visitors to four hundred and fifty-three flowers. Carlinville, IL, USA, C. Robertson. 409 Boreux, Virginie; Klein, Alexandra-Maria (2019). Global pollinator database. figshare. Dataset. https://doi.org/10.6084/m9.figshare.9980471.v1 384 Froese, R. and D. Pauly. Editors. 2018. FishBase. World Wide Web electronic publication. www.fishbase.org, version (10/2018). 334 Hurlbert, A. H., Olsen, A. M., Sawyer, M. M., and Winner, P. M. 2021. Avian Diet Database. https://doi.org/10.5281/zenodo.5151056 320 Global Web Database (http://globalwebdb.com): an online collection of food webs. Accessed via https://www.globalwebdb.com/Service/DownloadArchive on 2017-10-12. 296 Sarah E Miller. 06/10/2015. Species associations manually extracted from Chamberlin, W. J. The Buprestidae of North America, Exclusive of Mexico, a Catalogue including Synonomy, Bibliography, Distribution, Type Locality and Hosts of Each Species,. 1926. 290 California Academy of Sciences Entomology and Entomology Type Collection 290 BENSCH, S., HELLGREN, O. and PÉREZ‐TRIS, J. (2009), MalAvi: a public database of malaria parasites and related haemosporidians in avian hosts based on mitochondrial cytochrome b lineages. Molecular Ecology Resources, 9: 1353-1358. https://doi.org/10.1111/j.1755-0998.2009.02692.x 274 Food Webs and Species Interactions in the Biodiversity of UK and Ireland (Online). 2017. Data provided by Malcolm Storey. Also available from http://bioinfo.org.uk. 263 http://invertebrates.si.edu/parasites.htm 261 WorldFAIR pilot data from: VisitationData_Luisa_Carvalheiro. 248 Eneida L. Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer, J. Rodney Brister, Virus Variation Resource – improved response to emergent viral outbreaks, Nucleic Acids Research, Volume 45, Issue D1, January 2017, Pages D482–D490, https://doi.org/10.1093/nar/gkw1065 . 246 University of Hawaii Insect Museum 230 Canterbury Museum. (2025). Canterbury Museum (CMNZ) collection insect specimen-plant flower interactions (0.4) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.15429172 229 Palomares, M.L.D. and D. Pauly. Editors. 2018. SeaLifeBase. World Wide Web electronic publication. www.sealifebase.org, version (10/2018). 211 @article{Sabino_2022, doi = {10.1016/j.agee.2022.108012}, url = {https://doi.org/10.1016%2Fj.agee.2022.108012}, year = 2022, month = {sep}, publisher = {Elsevier {BV}}, volume = {335}, pages = {108012}, author = {William Sabino and Luciano Costa and Tamires Andrade and Juliana Teixeira and Gustavo Araújo and André Luís Acosta and Luísa Carvalheiro and Tereza Cristina Giannini}, title = {Status and trends of pollination services in Amazon agroforestry systems}, journal = {Agriculture, Ecosystems & Environment}} 204 Brigham Young University Arthropod Museum 181 Stokland, J.; Dahlberg, A.; Meyke, E.; Schigel, D.; Siitonen, J. (2006) The Nordic saproxylic database - a comprehensive overview of the biological diversity in dead wood. 1st European Congress of Conservation Biology - "Diversity for Europe". August 2006, Hungary. Book of Abstracts. Society of Conservation Biology (USA) & Blackwell Publishing (UK) p. 159 . 179 University of Wisconsin Stevens Point, Stephen J. Taft Parasitological Collection 169 Stephens, P. R., Pappalardo, P. , Huang, S. , Byers, J. E., Farrell, M. J., Gehman, A. , Ghai, R. R., Haas, S. E., Han, B. , Park, A. W., Schmidt, J. P., Altizer, S. , Ezenwa, V. O. and Nunn, C. L. (2017), Global Mammal Parasite Database version 2.0. Ecology, 98: 1476-1476. doi:10.1002/ecy.1799 164 Brose, U. et al., 2005. Body sizes of consumers and their resources. Ecology, 86(9), pp.2545–2545. Available at: https://doi.org/10.1890/05-0379. 162 Cruz, G.L.T., Winck, G.R., D’Andrea, P.S. et al. Integrating databases for spatial analysis of parasite-host associations and the novel Brazilian dataset. Sci Data 10, 757 (2023). https://doi.org/10.1038/s41597-023-02636-8 159 Yale University Peabody Museum Collections Data Portal 143 WIRC / University of Wisconsin Madison WIS-IH / Wisconsin Insect Research Collection 141 Bartomeus, Ignasi (2013): Plant-Pollinator Network Data. figshare. Dataset. https://doi.org/10.6084/m9.figshare.154863.v1 134 Sarah E Miller. 12/13/2016. Species associations manually extracted from Onstad, D.W. EDWIP: Ecological Database of the World's Insect Pathogens. Champaign, Illinois: Illinois Natural History Survey, [23/11/2016]. http://insectweb.inhs.uiuc.edu/Pathogens/EDWIP. 133 Llewelyn, J., Strona, G., Dickman, C.R., Greenville, A.C., Wardle, G.M., Lee, M.S.Y., Doherty, S., Shabani, F., Saltré, F. and Bradshaw, C.J.A. (2023), Predicting predator–prey interactions in terrestrial endotherms using random forest. Ecography e06619. https://doi.org/10.1111/ecog.06619 128 Species Interactions of Australia Database (SIAD): Helping us to understand species interactions in Australia and beyond. http://www.discoverlife.org/siad/ . 119 Field Museum of Natural History IPT 116 Lintulaakso, K., Tatti, N. and Žliobaitė, I., 2023. Quantifying mammalian diets. Mammalian Biology, 103(1), pp.53-67. https://doi.org/10.1007/s42991-022-00323-6 106 Groom, Q.J., Maarten De Groot, M. & Marčiulynienė, D. (2020) Species interation data manually extracted from literature for species . 106 Mihara, T., Nishimura, Y., Shimizu, Y., Nishiyama, H., Yoshikawa, G., Uehara, H., Hingamp, P., Goto, S., and Ogata, H.; Linking virus genomes with host taxonomy. Viruses 8, 66 doi:10.3390/v8030066 (2016). 99 San Diego Natural History Museum 92 Carlson, C.J. et al., 2021. The Global Virome in One Network (VIRION): an atlas of vertebrate-virus associations. Available at: http://dx.doi.org/10.1101/2021.08.06.455442 81 Cristina Preda and Quentin Groom. 2014. Species associations manually extracted from literature. 79 Faulwetter S, Markantonatou V, Pavloudi C, Papageorgiou N, Keklikoglou K, Chatzinikolaou E, Pafilis E, Chatzigeorgiou G, Vasileiadou K, Dailianis T, Fanini L, Koulouri P, Arvanitidis C (2014) Polytraits: A database on biological traits of marine polychaetes. Biodiversity Data Journal 2: e1024. doi:10.3897/BDJ.2.e1024 . Available at http://polytraits.lifewatchgreece.eu. 72 US National Museum of Natural History Ixodes Records 62 Almeida, F. (2005) Trophic Ecology of Atlantic Cod, off Cape Cod, MA, from F/V Riena Marie NEC-FA2001-1 in the Gulf of Maine from 2001-2004 (NEC-CoopRes project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version final) Version Date 2005-10-01 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3087 60 Farr, David F.; Rossman, Amy Y.; Castlebury, Lisa A. (2021). United States National Fungus Collections Fungus-Host Dataset. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1524414. 54 Soleto-Casas RC and Simões N (2020). Parasitic and commensal invertebrates of echinoderms from American Tropical And Subtropical Atlantic manually extracted from literature. 53 Semantic Prototypes in Research Ecoinformatics (SPIRE). Data provided by Joel Sachs. See also http://ebiquity.umbc.edu/get/a/publication/297.pdf . 48 Olito, Colin; Fox, Jeremy W. (2015), Data from: Species traits and abundances predict metrics of plant–pollinator network structure, but not pairwise interactions, Dryad, Dataset, https://doi.org/10.5061/dryad.7st32 45 Price Institute of Parasite Research, School of Biological Sciences, University of Utah 43 Sarah E Miller. 9/19/2017. Species associations manually extracted from Benesh, D. P., Lafferty, K. D. and Kuris, A. (2017), A life cycle database for parasitic acanthocephalans, cestodes, and nematodes. Ecology, 98: 882. doi:10.1002/ecy.1680 40 Pocock, Michael J. O.; Evans, Darren M.; Memmott, Jane (2012), Data from: The robustness and restoration of a network of ecological networks, Dryad, Dataset, https://doi.org/10.5061/dryad.3s36r118 37 Quentin J. Groom. 2020. Species interactions of species on the List of invasive alien species of Union concern 36 Sarah E Miller. 6/20/2015. Species associations manually extracted from datasets https://www.nceas.ucsb.edu/interactionweb/resources.html. 34 Ballantyne, Gavin; Baldock, Katherine C. R.; Willmer, Pat G. (2015), Data from: Constructing more informative plant-pollinator networks: visitation and pollen deposition networks in a heathland plant community, Dryad, Dataset, https://doi.org/10.5061/dryad.17pp3 32 Shaw, LP, Wang, AD, Dylus, D, et al. The phylogenetic range of bacterial and viral pathogens of vertebrates. Mol Ecol. 2020; 29: 3361– 3379. https://doi.org/10.1111/mec.15463 30 Sarah E Miller. 5/17/2016. Wenzel, Rupert L., and Vernon J. Tipton. Appendix: Classified List of Hosts and Parasites. Chicago, Ill.: Field Museum of Natural History, 1966. 27 Museum for Southwestern Biology (MSB) Parasite Collection 27 Sarah E Miller. 9/19/2016. Species associations extracted from Graystock, P., Blane, E.J., McFrederick, Q.S., Goulson, D. and Hughes, W.O., 2016. Do managed bees drive parasite spread and emergence in wild bees?. International Journal for Parasitology: Parasites and Wildlife, 5(1), pp.64-75. 26 Udy, Kristy; Reininghaus, Hannah; Scherber, Christoph; Tscharntke, Teja (2020), Data from: Plant-pollinator interactions along an urbanization gradient from cities and villages to farmland landscapes, Dryad, Dataset, https://doi.org/10.5061/dryad.4mw6m906s 23 Agosti, Donat. 2020. Transcription of Linné, C. von, 1758. Systema naturae per regna tria naturae secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Available at: http://dx.doi.org/10.5962/bhl.title.542 . 23 Sherman, Aja C.; Geiselman, Cullen; Simons, Nancy B.; Upham, Nathan S.; Poelen, Jorrit H.; Reeder, DeeAnn M.; Bertolino, Sandro; Groom, Quentin; Phelps, Kendra; Agosti, Donat; Willoughby, Anna R. In Preparation. Bat-Co-Roosting Database develop by the Biodiversity-related knowledge hub on COVID-19. 20 IPBES. (2016). The assessment report of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services on pollinators, pollination and food production. Table 2.4.3 p88 Zenodo. https://doi.org/10.5281/zenodo.3402857 20 Seltzer, Carrie; Wysocki, William; Palacios, Melissa; Eickhoff, Anna; Pilla, Hannah; Aungst, Jordan; Mercer, Aaron; Quicho, Jamie; Voss, Neil; Xu, Man; J. Ndangalasi, Henry; C. Lovett, Jon; J. Cordeiro, Norbert (2015): Plant-animal interactions from Africa. figshare. https://dx.doi.org/10.6084/m9.figshare.1526128 19 Jakovos Demetriou and Quentin Groom 2014. Species associations of Sceliphron manually extracted from literature. 18 Species Connect. https://speciesconnect.com 17 Geiselman, Cullen K. & Sarah Younger. 2020. Bat Eco-Interactions Database. www.batbase.org 16 Scientific Committee on Antarctic Research. (2023). SCAR Southern Ocean Diet and Energetics Database (2023-04-04) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7796465 hash://md5/e41e29d8fb3c2d731f292ec08798cf6b hash://md5/05abf23c0b9e5f4bc721ff407455af0a hash://sha256/7a344b858ab8d1daeca1da49843e8bf957f1116ff9e10a29176ab5c02cb49bef 14 Fabricia Sousa Paz, Carlos Eduardo Pinto, Rafael Melo de Brito, Vera Lucia Imperatriz-Fonseca, Tereza Cristina Giannini, Edible Fruit Plant Species in the Amazon Forest Rely Mostly on Bees and Beetles as Pollinators, Journal of Economic Entomology, Volume 114, Issue 2, April 2021, Pages 710–722, https://doi.org/10.1093/jee/toaa284 14 Meyer R.S., et al., Beach environmental DNA fills gaps in photographic biomonitoring to track spatiotemporal community turnover across 82 phyla. Environmental DNA, submitted June 3, 2019. 12 Gandhi, K. J. K., & Herms, D. A. (2009). North American arthropods at risk due to widespread Fraxinus mortality caused by the Alien Emerald ash borer. Biological Invasions, 12(6), 1839–1846. doi:10.1007/s10530-009-9594-1. 12 Gaden S. Robinson; Phillip R. Ackery; Ian Kitching; George W Beccaloni; Luis M. Hernández (2023). HOSTS (from HOSTS - a Database of the World's Lepidopteran Hostplants) [Data set resource]. Natural History Museum. https://data.nhm.ac.uk/dataset/hosts/resource/877f387a-36a3-486c-a0c1-b8d5fb69f85a via Natural History Museum (2023). Data Portal query on 1 resources created at 2023-05-24 11:19:42.032183 PID https://doi.org/10.5519/qd.bsucrxdz 12 Bernice Pauahi Bishop Museum, J. Linsley Gressitt Center for Research in Entomology 12 Lee, Leshon; Tan, David J. X.; Oboňa, Jozef; Gustafsson, Daniel R.; Ang, Yuchen; Meier, Rudolf (2021). Phoresy Records Appendix.xlsx. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12671711.v1 10 Consortium of Small Vertebrate Collections 10 C. Anela Choy, Steven H. D. Haddock, Bruce H. Robison. 2017. Deep pelagic food web structure as revealed by in situ feeding observations. Proc. R. Soc. B 2017 284 20172116; DOI:10.1098/rspb.2017.2116. 9 Sarah E Miller. 7/6/2016. Arctos collection. 8 Põlme, S., Abarenkov, K., Henrik Nilsson, R. et al. FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Diversity 105, 1–16 (2020). https://doi.org/10.1007/s13225-020-00466-2 7 Geiselman, Cullen K. and Tuli I. Defex. 2015. Bat Eco-Interactions Database. www.batplant.org 6 NEON Biorepository Portal at Arizona State University (ASU) 5 University of California Santa Barbara Herbarium 4 Sarah E Miller. 7/7/2016. Text gathered from Wirta, H.K., Vesterinen, E.J., Hambäck, P.A., Weingartner, E., Rasmussen, C., Reneerkens, J., Schmidt, N.M., Gilg, O. and Roslin, T., 2015. Exposing the structure of an Arctic food web. Ecology and evolution, 5(17), pp.3842-3856. 4 Sarah E Miller. 5/28/2015. Arnaud, Paul Henri. A Host-parasite Catalog of North American Tachinidae (Diptera). Washington, D.C.: U.S. Dept. of Agriculture, Science and Education Administration, 1978. 4 Sarah E Miller. 4/20/2015. Species associations manually extracted from various papers and articles from site https://repository.si.edu 4 Schriml, L. M., Arze, C., Nadendla, S., Ganapathy, A., Felix, V., Mahurkar, A., … Hall, N. (2009). GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database. Nucleic Acids Research, 38(Database), D754–D764. doi:10.1093/nar/gkp832 3 Sarah E Miller. 9/3/2015. Species associations manually extracted from JSTOR. 3 Sarah E Miller. 9/15/2016. Species associations extracted from http://parasiticplants.siu.edu/index.html. 3 Ministerio del Ambiente, Agua y Transición Ecológica de Ecuador - MAATE. 3 Jorrit H. Poelen. 2017. Species interactions associated with known species interaction datasets. 3 Gippet, J.M.W., Bates, O.K., Moulin, J. et al. The global risk of infectious disease emergence from giant land snail invasion and pet trade. Parasites Vectors 16, 363 (2023). https://doi.org/10.1186/s13071-023-06000-y 3 Thessen AE. 2017. Biotic Interactions in Greenland. GloBI. 10.5281/zenodo.266824 2 Strong, Justin S., and Shawn J. Leroux. 2014. "Impact of Non-Native Terrestrial Mammals on the Structure of the Terrestrial Mammal Food Web of Newfoundland, Canada." PLOS ONE 9 (8): e106264. https://doi.org/10.1371/journal.pone.0106264 2 Strona, G., Palomares, M. L. D., Bailly, N., Galli, P., & Lafferty, K. D. (2013). Host range, host ecology, and distribution of more than 11 800 fish parasite species. Ecology, 94(2), 544–544. doi:10.1890/12-1419.1 2 Sarah E. Miller. 04/14/2015. Extracted from literature Scott, J.A. 1986. The Butterflies of North America. Stanford University Press, Stanford, CA 2 Quentin J. Groom. 2020. Bat interation data manually extracted from literature. 2 Paleo Digitization Working Group. Biological associations extracted from fossil specimens. 2 Inouye, David (2017). An Access database of records collated from the literature about flies pollinating or at least visiting flowers, updated 2017. https://doi.org/10.13016/M2SZ73 http://hdl.handle.net/1903/19193 hash://sha256/a9ab0a6173d34695c85f5fb8947e196478d1253d9d79b0662921ef4e36639c05 2 Ferrer-Paris, José R.; Sánchez-Mercado, Ada Y.; Lozano, Cecilia; Zambrano, Liset; Soto, José; Baettig, Jessica; Leal, María (2014): A compilation of larval host-plant records for six families of butterflies (Lepidoptera: Papilionoidea) from available electronic resources. figshare. http://dx.doi.org/10.6084/m9.figshare.1168861 2 F. Gabriel. Muñoz. 2017. Palm-Animal frugivore associations extracted from literature with Biodiversity Observations Miner for SouthEast Asia. 2 Carnegie Invertebrate Zoology Collection 2 Zeke Marshall. 2021. Species interactions manually extracted from literature. 1 Vanderweyen, A., & Fraiture, A. (2009). Catalogue des Uredinales de Belgique, 1re partie, Chaconiaceae, Coleosporiaceae, Cronartiaceae, Melampsoraceae, Phragmidiaceae, Pucciniastraceae, Raveneliaceae et Uropyxidaceae. Lejeunia, Revue de Botanique|Vanderweyen, A., & Fraiture, A. (2009). Catalogue des Uredinales de Belgique, 2ème partie, Pucciniaceae (sauf Puccinia)(suite 2). Lejeunia, Revue de Botanique.|Vanderweyen, A., & Fraiture, A. (2012). CATALOGUE DES UREDINALES DE Belgique 3ème partie Pucciniaceae (genre Puccinia). Lejeunia, Revue de Botanique. 1 Vanderweyen A, Fraiture A, Groom Q, Desmet P, Reyserhove L (2019). Catalogue of the Rust Fungi of Belgium. Botanic Garden Meise. 1 Sarah E Miller. 5/21/2015. Text gathered from http://www.biodiversitylibrary.org/ 1 Sarah E Miller. 3/4/2015. Species associations manually extracted from http://onlinelibrary.wiley.com/doi/10.1111/j.1474-919X.2009.00907.x/suppinfo. 1 HiveTracks WorldFAIR Test Data. 1 Gunther KA et al. 2014 Dietary breadth of grizzly bears in the Greater Yellowstone Ecosystem. Ursus 25(1):60-72 1 Deans, Andrew (2021). Catalog of Rose Gall, Herb Gall, and Inquiline Gall Wasps (Hymenoptera: Cynipidae) of the United States, Canada, and Mexico 1 De Rojas M, Doña J, Dimov I (2020) A comprehensive survey of Rhinonyssid mites (Mesostigmata: Rhinonyssidae) in Northwest Russia: New mite-host associations and prevalence data. Biodiversity Data Journal 8: e49535. https://doi.org/10.3897/BDJ.8.e49535 1 Camargo-Sanabria, A.A., Fernández, J.A., Hernández-Quiroz, N.S., Buitrago-Torres, D.L. and Álvarez-Córdova, F. (2025), Ecological Interactions of Terrestrial Mammals in the Chihuahuan Desert: A Systematic Map. Mam Rev e70001. https://doi.org/10.1111/mam.70001 1 Bourlat SJ, Koch M, Kirse A, Langen K, Espeland M, Giebner H, Decher J, Ssymank A, Fonseca VG (2023) Metabarcoding dietary analysis in the insectivorous bat Nyctalus leisleri and implications for conservation. Biodiversity Data Journal 11: e111146. https://doi.org/10.3897/BDJ.11.e111146 1 References Poelen JH, Simons JD, Mungall CJ (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2014.08.005 Seltmann KC, Allen J, Brown BV, Carper A, Engel MS, Franz N, Gilbert E, Grinter C, Gonzalez VH, Horsley P, Lee S, Maier C, Miko I, Morris P, Oboyski P, Pierce NE, Poelen J, Scott VL, Smith M, Talamas EJ, Tsutsui ND, Tucker E (2021) Announcing Big-Bee: An initiative to promote understanding of bees through image and trait digitization. Biodiversity Information Science and Standards 5: e74037. https://doi.org/10.3897/biss.5.74037 Poelen, JS & Seltmann, KS (2024) Bees Only Please: Bees Only Please: Selecting Hundreds of Thousands of Possible Bee Interactions Using a Laptop, Open Datasets, and Small (but Mighty) Commandline Tools. https://www.globalbioticinteractions.org/2024/06/07/bees-only-please Ascher, J. S. and J. Pickering (2020) Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila). http://www.discoverlife.org/mp/20q?guide=Apoidea_species. Acknowledgements This project is supported by the National Science Foundation. Award numbers: DBI:2102006, DBI:2101929, DBI:2101908, DBI:2101876, DBI:2101875, DBI:2101851, DBI:2101345, DBI:2101913, DBI:2101891 and DBI:2101850



