josoga2/eccebp-alpha-project: F1000 Code Release

Code for analyzing the datasets Dataset Description: Num: Row Number Hybridization REF: CpG Reference ID Position: Position in hg19 Gene: Entrez Gene Symbol Chrome: Chromosome Number p_vals: P value for t-test between patients with CEBPA and without CEBPA mutation mean_cebpa_mut: mean methylation score for patients with CEBPA mutation mean_no_cebpa_mut: mean methylation score for patients with CEBPA mutation site_status: prediction status for CEBPA sites fdr: fdr p_value This project contains the following extended data: Supplementary Table 1: Summary table of DNA binding domains (DBD), the counts of target regions within the genome and statistical analysis. (DNA_BINDING_DOMAINS_ID.tsv) Sequence: ecCEBPα secondary structure prediction with RNAplfold at a pairing probability cut off of 0.1. N represents all sequences with pairing probability greater than 0.1. (predicted_secondary_structure_of_ecCEBPA.fa)