Table 1 in Thyridium revised: Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales

Table 1. Isolates and GenBank accessions of sequences used in the phylogenetic analyses of Sordariomycetes (Fig. 1).
TaxonIsolateaStatusbGenBank accession numbersaRef.cLSUrpb2tef1Acrodictys aquaticaMFLUCC 18-0356HTMG835712--47Acrodictys bambusicolaHSAUP myr9510KX033564--44Annulatascus velatisporusA70 18AY316354--3Annulusmagnus triseptatusCBS 128831GQ996540JQ429258-25, 29Ascitendus austriascusCBS 131685GQ996539JQ429257-25, 29Atractospora reticulataCBS 127884HTKT991660KT991649-41Atractospora thailandensisKUMCC 16-0067HTMF374362MF370951MF37096245Barbatosphaeria arboricolaCBS 127689HTKM492862KM492901-38Barbatosphaeria barbirostrisCBS 121149EF577059KM492903-18, 38Barbatosphaeria varioseptataCBS 137797HTKM492869KM492907-38Barrmaelia rhamnicolaCBS 142772ETMF488990MF488999MF48900952Bombardia bombardaAFTOL-ID 967DQ470970DQ470923DQ47109514Calosphaeria pulchellaCBS 115999ITAY761075GU180661FJ2384218, 27Camarops microsporaCBS 649.92AY083821DQ470937-13, 14Camarotella costaricensisMM-149KX430484KX451954KX45198243Cancellidium cinereumMFLUCC 18-0424HTMT370363MT370486MT37048857Cancellidium griseonigrumMFLUCC 17-2117HTMT370364MT370487-57Ceratolenta caudataCBS 125234HTJX066704JX066699-33PRM 899855JX066705--33Chaetosphaeria ciliataICMP 18253GU180637GU180659-27Chaetosphaeria curvisporaICMP 18255GU180636GU180655-27Cryptadelphia groenendalensisSH12EU528007--20SMH3767EU528001--20Diaporthe phaseolorumNRRL 13736U47830--1Distoseptispora obpyriformisMFLUCC 17-1694HTMG979764MG988415MG98842248Distoseptispora rostrataMFLUCC 16-096HTMG979766MG988417MG98842448Endoxyla operculataUAMH 11085JX460992KY931927-34, 49Entosordaria perfidiosaCBS 142773ETMF488993MF489003MF48901252Fluminicola aquaticaMFLUCC 15-0962HTMF374366-MF37096045Fluminicola saprotrophiticaMFLUCC 15-0976HTMF374367MF370954MF37095645Gnomonia gnomonCBS 199.53AF408361DQ470922DQ4710942, 14Jobellisia fraternaSMH2863AY346285--4Jobellisia luteolaSMH2753AY346286--4Lanspora coronataAFTOL-ID 736U46889DQ470899-14Lasiosphaeria ovinaSMH4605AY436413AY600284DQ8369086, 7, 16Lentomitella cirrhosaICMP 15131ETAY761085KM492911-11, 38Lentomitella crinigeraCBS 138678KY931811--49Linocarpon livistonaeHKUM 6520DQ810205DQ810248-10Magnaporthe salviniiM 21JF414887-JF71040628Magnaporthiopsis agrostidisCBS 142740HTKT364754-KT36475637Melanconis stilbostomaCBS 109778AF408374EU219299EU2218862Myrmecridium montsegurinumJF 13180HTKT991664KT991654-41Myrmecridium schulzeriCBS 100.54EU041826--17Myrmecridium thailandicumCBS 136551HTKF777222--30Neolinocarpon enshienseHKUCC 2983DQ810221DQ810244-10Neolinocarpon globosicarpumHKUCC 1959DQ810224DQ810245-10Ophiostoma piliferumCBS 158.74DQ470955DQ470905DQ47107414Ophiostoma stenocerasCBS 139.51DQ836904DQ836891DQ83691216Papulosa amerosporaAFTOL-ID 748DQ470950DQ470901DQ47106914Pararamichloridium caricicolaCBS 145069HTMK047488--46Pararamichloridium livistonaeCBS 143166HTMG386084--54Pararamichloridium verrucosumCBS 128.86HTMH873621--56Phaeoacremonium fraxinopennsylvanicaM.R. 3064HQ878595HQ878609-26Phaeoacremonium novae-zealandiaeCBS 110156HTAY761081--8Phomatospora bellaminutaAFTOL-ID 766FJ176857FJ238345-23Phomatospora biseriataMFLUCC 14-0832AKX549448--51Phyllachora graminisTH-544KX430508--43Pleurostoma oothecaCBS 115329ITAY761079HQ878606FJ2384208, 23, 26Pseudostanjehughesia aquitropicaMFLUCC 16-0569HTMF077559-MF13565553Pseudostanjehughesia lignicolaMFLUCC 15-0352HTMK849787MN124534MN19404755Pyricularia borealisCBS 461.65DQ341511--24Pyricularia bothriochloaeCBS 136427HTKF777238--30Rhamphoria delicatulaCBS 132724FJ617561JX066702-22, 33Rhamphoria pyriformisCBS 139024MG600397MG600401-50Rubellisphaeria absconditaCBS 132078HTKT991666KT991657-41Sordaria fimicolaCBS 723.96AY780079DQ368647-9, 19Spadicoides binaCBS 137794KY931824KY931851-49Sporidesmium minigelatinosaNN 47497DQ408567DQ435090-12Sporidesmium parvumHKUCC 10836DQ408558--12Thyridium cornearisCBS 131711HTKJ573450-LC38214436Thyridium curvatumCBS 490.82HTAB189156-LC38214215Thyridium endophyticumACCC 38980HTKT799560--42Thyridium flavostromatumKT 3891 = MAFF 247509HTLC655963LC655967LC655971This studyThyridium hongkongenseHKU39HTKJ573447--36Thyridium limonesiaeCBS 146752HTMW050976--58Thyridium oculorumCBS 110031HTKJ573449-LC38214536Thyridium pluriloculosumCBS 131712HTHE599271-LC38214132KT 3803 = MAFF 247508LC655964LC655968LC655972This studyThyridium punctulatumKT 1015 = MAFF 239669LC655965LC655969LC655973This studyKT 3905 = MAFF 247510ETLC655966LC655970LC655974This studyThyridium vestitumCBS 113027AY544671DQ470890DQ471058 d5, 14CBS 125582MH875182--56Tirisporella beccarianaBCC 36737JQ655450--39Tirisporella bisetulosusBCC 00018EF622230--21Wongia griffiniiBRIP 60377KU850470-KU85046640Woswasia atropurpureaCBS 133167HTJX233658JX233659-31Xylochrysis lucidaCBS 135996HTKF539911KF539913-35Xylolentia brunneolaPRA-13611HTMG600398MG600402-50
a Strains and sequences generated in this study are shown in bold. bET = epitype; HT = holotype; IT = isotype c 1: Viljoen et al. 1999; 2: Castlebury et al. 2002; 3: Raja et al. 2003; 4: Huhndorf et al. 2004; 5: Lutzoni et al. 2004; 6: Miller and Huhndorf 2004a; 7: Miller and Huhndorf 2004b; 8: Réblová et al. 2004; 9: Miller and Huhndorf 2005; 10: Bahl 2006; 11: Réblová 2006; 12: Shenoy et al. 2006; 13: Smith et al. 2006; 14: Spatafora et al. 2006; 15: Yaguchi et al. 2006; 16: Zhang et al. 2006; 17: Arzanlou et al. 2007; 18: Réblová 2007; 19: Tang et al. 2007; 20: Huhndorf et al. 2008; 21: Pinruan et al. 2008; 22: Réblová 2009; 23: Schoch et al. 2009; 24: Thongkantha et al. 2009; 25: Réblová et al. 2010; 26: Réblová 2011; 27: Réblová et al. 2011; 28: Zhang et al. 2011; 29: Réblová et al. 2012; 30: Crous et al. 2013; 31: Jaklitsch et al. 2013; 32: Perdomo et al. 2013; 33: Réblová 2013; 34: Untereiner et al. 2013; 35: Réblová et al. 2014; 36: Tsang et al. 2014; 37: Crous et al. 2015b; 38: Réblová et al. 2015; 39: Suetrong et al. 2015; 40: Khemmuk et al. 2016; 41: Réblová et al. 2016; 42: Su et al. 2016; 43: Mardones et al. 2017; 44: Xia et al. 2017; 45: Zhang et al. 2017; 46: Crous et al. 2018; 47: Hyde et al. 2018; 48: Luo et al. 2018; 49: Réblová et al. 2018; 50: Réblová and Štěpánek 2018; 51: Senanayake et al. 2018; 52: Voglmayr et al. 2018; 53: Yang et al. 2018; 54: Crous et al. 2019; 55: Luo et al. 2019; 56: Vu et al. 2019; 57: Hyde et al. 2021; 58: Martinez et al. 2021. d This tef1 sequence (DQ471058) of Thyridium vestitum was excluded from this analysis. A Blast search using this sequence suggested that it is close to Phialemonium obovatum (Cephalothecales) rather than Thyridium / Phialemoniopsis (Thyridiales).