Diamond database for taxonomic annotation of fungal metatranscriptomics

This is a protein fasta dataset for use with diamond. The <strong>fasta.gz</strong> file contains protein sequences for the following: 1,164 genomes downloaded from JGI (<strong>taxonomy_taxids.tsv</strong>) 121 genomes that are part of the taxmapper database (<strong>taxmapper_taxonomy_taxids.tsv</strong>) of which 6 were fungal the <em>Hygrophorus russula </em>MG78<em> </em>genome downloaded from NCBI. For the <em>H. russula</em> genome, genes were predicted using Augustus (v. 3.2.3) with the laccaria_bicolor model. The final protein database consists of a total of 17,694,143 protein sequences (14,976,193 from JGI, 2,708,401 from taxmapper and 9,549 from <em>H. russula</em>). The fasta file and associated taxonomic information files (nodes.dmp.gz &amp; taxonmap.gz) can be used to build a diamond database compatible with diamond version 0.9.22: <pre><code class="language-bash">zcat fasta.gz | diamond makedb -d diamond --taxonmap taxonmap.gz --taxonnodes nodes.dmp</code></pre>