Bisulfite-treated reads mapping tools.

Some bisulfite-treated reads mapping tools listed according to some relevant features. The second columns indicates whether the corresponding tool adopts a 3-letter conversion strategy. The third column reports the maximum number of mismatches allowed for the read. The fourth column reports whether the corresponding tool supports gapped alignments. The fifth column reports the maximum number of hits allowed for a read. The sixth column reports whether the corresponding tool supports WGBS and RRBS protocols.
Using Bowtie2.