Additional file 2 of A human stomach cell type transcriptome atlas

Additional file 2:Table S1. Reference transcript selection and analysis criteria. (Tab 1): Correlation coefficient values were calculated between selected Ref.T. to represent constituent stomach cell types. (Tab 2): Correlation coefficient values were calculated between selected Ref.T. and all other sequenced transcripts in GTEx stomach mRNAseq data (Table A) and the mean differential vs. all Ref.T. panels (Table B). Genes classified as enriched in: (Tab 3) parietal cells, (Tab 4) chief cells, (Tab 5) gastric enteroendocrine cells, (Tab 6) gastric mucous cells, (Tab 7) mitotic cells, (Tab 8) endothelial cells, (Tab 9) fibroblasts, (Tab 10) macrophages, (Tab 11) neutrophils, (Tab 12) T-cells and (Tab 13) plasma cells were analysed to identify over-represented terms in the (Table A) gene ontology or (Table B). (Tab 14) Comparison of our cell type enrichment predictions with scRNAseq datasets. See key for column details. Related to all Figures.