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Supplementary data 1 – metadata and metabolic data for genomes used in Hidden from plain sight: Novel Chlamydiota diversity emerging from screening genomic and metagenomic data.

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DataCite Commons2023-08-16 更新2024-09-03 收录
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Supplementary data 1 – metadata and metabolic data for genomes used in Hidden from plain sight: Novel Chlamydiota diversity emerging from screening genomic and metagenomic data.<br>Contains all metadata for genomes assembled and genomes used, includingaccession numbers, CheckM scores and Gtdbtk taxonomy. You will also find raw data usedto produce the figures.<br>Here you will find all metadata for genomes as well as some extra metabolic data<b>Yellow tabs contain:</b>S1 - Metadata for genomes assembled in this study extracted from SRAS2 - Metadata for environmental MAGs recovered from NCBI non redundant sequence databaseS3 - Metadata for additional Chlamydiota genomes used<b>Red tabs contain:</b>S4 - AAI percentage similarity scores used to produce genera similarity networksS5 - ANIb percentage similarity scores used to produce species similarity networksS6 - CRISPRcas finder resultsS7 - KEGG pathway hitsS8 - KEGG pathway completenessS9 - Gene cluster presence absence matrix used in figure 4.3a for RhabdochlamydiaceaeS10 - Gene cluster presence absence matrix used in figure 4.3b for SimkaniaceaeS11 - Summaries for gene clusters from Anvi'o used to produce figure 1S12 - Interproscan results for contigs with blastp results matching the large HYDA domain of T. vaginalis (XP_001322682.1), Nyctotherus ovalis (CAA76373.1), and Thalassiosira pseudonana (XP_002295160.1)S13 - HYDDB results for contigs with blastp results matching the large HYDA domain of T. vaginalis (XP_001322682.1), Nyctotherus ovalis (CAA76373.1), and Thalassiosira pseudonana (XP_002295160.1)
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2023-03-20
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