PRIME atlas of transcription initiation-derived gene regulatory elements in human cells

This resource provides genome-wide maps of transcription initiation-derived gene regulatory elements (GREs) identified using the PRIME computational framework. The dataset includes cell line-specific predictions, FANTOM5 facet-level predictions, merged facet predictions, pooled GRE datasets, and TPM-normalized CAGE signal tracks. GRE predictions are provided as coordinate-sorted BED files (bgzip-compressed and tabix-indexed) for efficient genomic querying, while strand-specific bigWig files provide genome browser-ready visualization of transcription initiation activity across FANTOM5 facets. The resource contains: • cell line-specific GRE predictions • FANTOM5 facet-level GRE predictions (tar archived) • pooled and merged GRE datasets • TPM-normalized bigWig signal tracks (tar archived) All files are based on the GRCh38 genome assembly and are directly compatible with tools such as tabix, IGV, and the UCSC Genome Browser.