Functional matrices N, TEs vs promoters, weighted with L = 2.5e5kb, hg19

Refers to the manuscript: "Statistical learning quantifies transposable element-mediated cis-regulation", by Pulver et al., 2023.

TE subfamilies are split between so-called "functional" and complementary "non-functional" fractions. Functional integrants were defined as such based on overlapping epigenomics data (e.g. transcription factor binding by ChIP-seq, open chromatin by ATAC-seq).

The "functional_weighted_mappability" only contain cis-regulatory weights for selected subfamilies, split between low and high mappability (median split over averages per integrants). They should be incorporated into N_functional_weighted matrices for the appropriate experiments, and not be used on their own.