Supplementary Data S2 - de novo reconstructed transcripts
收藏DataCite Commons2021-02-13 更新2024-07-28 收录
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https://figshare.com/articles/dataset/Supplementary_Data_S2_-_de_novo_reconstructed_transcripts/9994736/1
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To assemble de novo transcripts from RNA-seq data, Cufflinks v2.2.1 (Roberts et al., 2011) was used with default parameters, with the TAIR10 general feature format (GFF) annotation provided as a guide (option -g). Cuffcompare was applied to compare the set of de novo transcripts across genotypes. De novo transcripts overlapping a reference exon or intron but on the opposite strand (codes s and x, respectively), and associated with an RNA-seq up-regulated gene on the reverse strand were selected for assessing the length and splicing of exosome-sensitive transcripts. <br>
提供机构：
figshare
创建时间：
2020-10-01
