Reanalysis of PXD041414

This repository contains a dataset analyzed in "De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution". Specifically, this repository contains the reanalysis of the protein-SIP data obtained from PXD041414 ("1% 2% 5% 25% 50% 100% 13C-labeled E. coli protein") that was published in Xiong Y, Mueller RS, Feng S, Guo X, Pan C. Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins. Microbiome. 2024;12:148 mztab files originate from Casanovo tsv files originate from PepNet xlsx file originates from merging Unipept and MetaProSIP output