Supplementary plastid-genetic information relating to Worth et al., <i>Reticulate history of beech</i>

This multi-sheet file included detailed information regarding the chloroplast DNA based genetic analyses undertaken in Worth et al. (2025), Reticulate history of beechIt includes nine sheets:<i>New and used plastomes</i> lists the complete chloroplast genome sequences used in the study (newly assembled and harvested from gene banks) with meta-information (haplotype, provenance, coordinates);<i>PlstmDissim </i>gives a auto-coloured dissimilarity matrix (heat map), inferred on plastid SNPs;<i>OptModels </i>details the partition-wise substitution models optimised during maximum likelihood tree inference;<i>cp splits </i>is a comprehensive tabulation of (alternative) support for (partly incompatible) taxon bipartitions inferred via non-parametric boostrapping;<i>cp gene stats</i> tabulates Pi values, etc. per gene region;<i>AddHTs_tKmK_LinI</i> lists mutation patterns in <i>trnK/matK </i>sequence data stored in gene banks in relation to the newly assembled complete plastomes of <i>F. grandifolia</i>;<i>GB-HTs_trnTLF</i> lists mutation patterns in the <i>trnL </i>gene (exon + intron) and flanking intergenic spacers (<i>trnT-trnL </i>and <i>trnL-trnF</i>), stored in gene banks, in relation to the according region in the complete plastome data;<i>LinV HTs</i><i><em> </em></i>lists mutation patterns in most-diverse plastid regions of the Western Eurasian species (complete plastome data available for <i>F. caspica </i>and <i>F. sylvatica</i>)The additionally provided graphic depicts the comprehensive chloroplast genome-based tree inferred by Worth et al. (2025).<br>