Supplemental Material for Busche et al., 2019

File S1. Per chromosome read coverage distribution of Dwarf Cavendish reads. File S2. Comparison of SNVs in the duplicated segment on the long arm of chromosome 2 to all other SNVs in the genome. The higher read coverage at variants indicates a duplication of this region. File S3. List of public genomic banana sequence read samples used for comparison against Dwarf Cavendish based on the DH Pahang reference. File S4. Coverage plots of public genomic banana sequence read samples (File S1) for comparison against Dwarf Cavendish based on the DH Pahang reference. Samples are: Musa acuminata, Musa acuminata AYP_BOSN_r1, Musa acuminata ssp. banksii, Musa acuminata ssp. burmannica, Musa acuminata Cavendish BaXiJiao, Musa acuminata Gros Michel, Musa acuminata ssp. malaccensis, Musa acuminata Sucrier (Pisang Mas), Musa acuminata Sucrier (Pisang Mas 1998-2307), Musa acuminata ssp. zebrina (blood banana), Musa balbisiana Pisang Klutuk Wulung, Musa itinerans, Musa schizocarpa. File S5. List of selected high impact variants between Dwarf Cavendish and DH Pahang with resulting effects predicted by SnpEff.附件S1：矮化卡文迪什香蕉（Dwarf Cavendish）测序读段的染色体覆盖度分布。 附件S2：将2号染色体长臂重复区段内的单核苷酸变异（Single Nucleotide Variants, SNVs）与基因组中其余所有单核苷酸变异进行比较；变异位点处较高的测序覆盖度表明该区域存在重复。 附件S3：基于DH Pahang参考基因组，用于与矮化卡文迪什香蕉（Dwarf Cavendish）进行比对的公开香蕉基因组测序读段样本列表。 附件S4：基于DH Pahang参考基因组，用于与矮化卡文迪什香蕉（Dwarf Cavendish）进行比对的公开香蕉基因组测序读段样本（即附件S1）的覆盖度分布图；样本包括：小果野蕉（Musa acuminata）、小果野蕉AYP_BOSN_r1、小果野蕉班克西亚种（Musa acuminata ssp. banksii）、小果野蕉缅甸亚种（Musa acuminata ssp. burmannica）、小果野蕉卡文迪什巴蕉品系（Musa acuminata Cavendish BaXiJiao）、小果野蕉大麦克（Musa acuminata Gros Michel）、小果野蕉马六甲亚种（Musa acuminata ssp. malaccensis）、小果野蕉苏克里尔（Pisang Mas，即香牙蕉）、小果野蕉苏克里尔（Pisang Mas 1998-2307）、小果野蕉红斑亚种（Musa acuminata ssp. zebrina，又名血蕉）、野蕉（Musa balbisiana）Pisang Klutuk Wulung、芭蕉（Musa itinerans）、裂果芭蕉（Musa schizocarpa）。 附件S5：矮化卡文迪什香蕉（Dwarf Cavendish）与DH Pahang之间筛选出的高影响变异位点列表，其变异效应由SnpEff软件预测得到。