Recombination rate variation in Cardiocondyla obscurior

Datasets produced to analyze recombination rate variation in <em>C. obscurior</em>. This includes the following files: <br> - <strong>TEislands.w250kb.bed</strong>: bed file with coordinates of TE islands <br> - <strong>final.metrics.in250kbwindows.tsv</strong>: tsv file with various metrics estimated in 250-kb nonoverlapping windows. These metrics include recombination rates, population genomics estimates as well as other sequence parameters (e.g. TE/gene content) <br> - <strong>introgression.250kb.bed</strong>: bed files with coordinates of regions with substantially high Dxy between grandparental haplotypes <br> - <strong>manuallyCurated.markers.forR.txt</strong>: formatted and manually curated MSTmap output <br> - <strong>Cobs3.1.chrom-size.txt</strong>: chromosome length <br> - <strong>manuallyCurated.markers.correctPhase.xlsx</strong>: markers used to produce reference genetic map with the correct phase <br> - <strong>SVs folder</strong>: contains: <br> ---- <strong>sv.bed.filtered.repeat.0.2.txt</strong>: coordinates of SVs with less than 0.2 repeat content <br> ---- <strong>sv.type.recomb.repeat.freq.all.txt</strong>: coordinates and frequencies of all SVs as well as their repeat content (meanperc column) and the corresponding recombination rate