High-scoring amplified gene hubs detected by Lemon-Tree.

List of the top 20 amplified genes ordered by decreasing sum of score values. Nm: number of modules in which the gene is selected as a high-scoring regulator. % amp.: percentage of samples in which the gene is classified as low-level gain or high-level amplification (according to GISTIC putative calls). M-list: presence in a list of genes frequently mutated in cancer, compiled from [42–44]. P-list: presence in a list of genes recurrently amplified or deleted in 11 cancer types [33]. High-scoring amplified gene hubs detected by Lemon-Tree.