maxATAC Blacklist Resources

This data upload contains the hg38 resources uses to make the maxATAC blacklist. Files Included: ENCFF356LFX.bed: hg38 Blacklist from Anshul curation hg38_maxatac_blacklist.bed: V1 maxATAC blacklist hg38-blacklist.v2.bed: V2 blacklist from ENCODE project + Boyle lab hg38_gaps.bed: UCSC table browser list of annotated gaps hg38_centromeres.bed: UCSC table browser list of annotated centromeres hg38_segmental_dups_chrM.bed: UCSC table browser list of segmental duplications that are specific to chrM hg38_maxatac_blacklist_V2.bed: V2 maxATAC blacklist

本数据集上传文件包含用于构建maxATAC黑名单的hg38相关资源。所包含文件详情如下：
1. ENCFF356LFX.bed：由Anshul整理的hg38黑名单文件
2. hg38_maxatac_blacklist.bed：V1版maxATAC黑名单
3. hg38-blacklist.v2.bed：ENCODE项目与博伊尔实验室（Boyle lab）联合发布的V2版黑名单
4. hg38_gaps.bed：UCSC表格浏览器获取的注释化间隙序列列表
5. hg38_centromeres.bed：UCSC表格浏览器获取的注释有着丝粒序列列表
6. hg38_segmental_dups_chrM.bed：UCSC表格浏览器获取的仅针对chrM的片段重复序列列表
7. hg38_maxatac_blacklist_V2.bed：V2版maxATAC黑名单

搜集汇总

背景与挑战

背景概述

该数据集提供了用于maxATAC分析的人类基因组hg38黑名单资源，包含多个BED文件，如ENCODE项目黑名单、UCSC注释的间隙和着丝粒等。这些资源旨在帮助研究人员在ATAC-seq数据分析中过滤假阳性信号，提高转录因子结合位点预测的准确性。数据集采用开放许可，便于学术使用和再分发。