A computational genomics approach to identify cis-regulatory modules - a case study using E2F1

ChEBI2010-07-01 更新2026-07-21 收录

顺式调控模块

计算基因组学

数据链接：

https://www.ebi.ac.uk/biostudies/ArrayExpress/studies/E-GEOD-5175 数据链接链接失效反馈

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资源简介：

A computational genomics approach to identify cis-regulatory modules - a case study using E2F1

创建时间：

2010-07-01

Liu-Hy/GenoTEX

基因表达分析

计算基因组学

GenoTEX是一个用于自动化基因表达数据分析的基准数据集，旨在识别与疾病相关的基因，同时考虑其他生物因素的影响。它提供了1,384个基因-性状关联分析问题，41.5GB的输入数据，以及由生物信息学专家精心策划的237,907行分析代码。该数据集分为三个主要目录：输入、输出和元数据，每个目录包含特定类型的数据和文件。README还解释了如何安装、探索和评估基准，以及如何使用它来开发和测试自动化方法

Hugging Face2025-04-08 更新90

Supplementary Material for: Computational Prediction of the Global Functional Genomic Landscape: Applications, Methods, and Challenges

功能基因组学预测

计算基因组学

Technological advances have led to an explosive growth of high-throughput functional genomic data. Exploiting the correlation among different data types, it is possible to predict one functional ge

NIAID Data Ecosystem50

Accurate prediction of functional states of cis-regulatory modules reveals common epigenetic rules in humans and mice

表观遗传学预后预测

顺式调控模块

All of the data and software on which the conclusions rely in the manuscript. It includes K562 features and labels, the code, and the trained model.

NIAID Data Ecosystem40

Codonlike kmer5-based mRNA stability analysis in m-human2 (CDS level).

RNA稳定性预测

计算基因组学

(CSV)

NIAID Data Ecosystem60

Additional file 6: of Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling

染色质可及性分析

顺式调控模块

Table S5.ATAC-seq peaks significantly differentially enriched (DESSeq2 nominal p < 0.2) in isolated PMCs compared to non-PMC cells. Column 1: ATAC-seq Peak Name: Peak number, obtained from ATAC-seq RP

Figshare2018-03-21 更新50

A computational genomics approach to identify cis-regulatory modules - a case study using E2F1

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