File S1 - Enhancement of Collective Immunity in Tokyo Metropolitan Area by Selective Vaccination against an Emerging Influenza Pandemic

Enhancement of collective immunity by selective vaccination against an emerging influenza pandemic. Contains Figure S1, Figure S2, Figure S3, and Table S1. Figure S1. Pseudo code of a single step of the simulation. All information on the simulated urban area is contained in the structure instance city, which is located in shared memory. Iterations and branches are in a Fortran-like code, but the structure name and its field are split by a dot. Simulations are carried out in parallel based on OpenMP, and iterations marked by !OMP DO are adequately split by the compiler and carried out in parallel. Calculation of the transition probability places{key = v}.pr is implemented to conform to the diagram of Eq. (2). Figure S2. Age-specific distribution of the population of Tokyo in 2005. We sampled from this distribution to obtain the ages of individuals, and their roles were assigned according to their ages. The proportions of roles in the simulation are represented by different colors (blue: students, red: employees, and yellow: domiciliaries). Figure S3. Distribution of corporation sizes. The rank in the corporation size versus the number of employees. Table S1. List of parameters configuring simulation.
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