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Supplementary tables for the paper "A set of 16S rDNA metagenomic data of the bacterial community of the rhizosphere of white poplar growing in the European part of the Russian Federation"

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DataCite Commons2024-02-26 更新2024-09-03 收录
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https://figshare.com/articles/dataset/Supplementary_tables_for_the_paper_A_set_of_16S_rDNA_metagenomic_data_of_the_bacterial_community_of_the_rhizosphere_of_white_poplar_growing_in_the_European_part_of_the_Russian_Federation_/25284547
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<br>The ratio of bacterial taxa in each soil collection region and by season are presented in Supplementary Table 1 (normalized read counts).Supplementary Tables 2, 3 provide the predicted relative abundance (in percents) of genes encoding for various enzymes (IUBMB Enzyme Nomenclature), according to PICRUSt2 and MicFunPred predictions, respectively. It is worth noting that abundance values can be higher than 100% in cases where a gene have multiple copies in genomes.Supplementary Table 4 shows the predicted abundance of genes encoding for various known proteins, according to KEGG Orthology nomenclature (predicted with PICRUSt2).Supplementary Table 5 contains data on the availability of chemical reactions in the microbial community (inferred by MicFunPred; MetaCyc nomenclature), including those catalyzed by the encoded enzymes.Supplementary Table 6 shows the relative availability of metabolic pathways (MetaCyc nomenclature ) as predicted by PICRUSt2.
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figshare
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2024-02-26
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