Additional file 1 of Runs of homozygosity in Swiss goats reveal genetic changes associated with domestication and modern selection

Additional file 1: Table S1. Accession numbers of the sequenced goats in this study. Information on 226 goats from different breeds and ENA accessions for the sequence data. Table S2. 344 ROH islands observed in the 11 caprine populations investigated. Chromosomes and end positions of 1-Mb windows harbouring ROH-regions are provided. Breeds with a ROH-proportion exceeding 80% in this 1-Mb window are indicated with 1. The table on the right gives a summary over the 29 autosomes and the number of ROH islands. Table S3. List of the 1220 annotated genes in the regions of ROH islands. For each gene, the chromosome number, the start- and end position, the number of SNVs are given within a gene and that is part of the ROH (X), and also the average proportion of individuals of each population that has the X-SNPs in an ROH. The rows with the eight genes selected for Table 3 are marked in grey. Table S4. Information and the 226 individual genotypes for the two protein coding variants in the STC1 and TSHR genes. Table S5. Frequencies of the reference alleles at the two coding variants in STC1 and TSHR in samples from the 1372 individual sequences collected by the The VarGoats Consortium different origins.