Nematode ITS2 Database

<strong>Nematode ITS2 database</strong> These are the sequence and taxonomy files for the Nematode ITS2 database. This database was created with markerDB. Please see that repository for full details on the file formats. The main database consists of the "seqs_nr.fasta" and the associated "taxonomy_nr.txt". These contain the non-redundant ITS2 sequences. The database is available in some other common formats used for assigning taxonomy and are listed below<code>.</code> dada2: dada2’s <code>assignTaxonomy</code> function rdp: to train a custom RDP database with the <code>rRDP</code> Bioconductor package (this is pretty much the same as <code>assignTaxonomy</code>) mothur: a fasta file and paired mothur taxonomy file. Works with the Nemabiome pipeline. An alignment is also written out that should work with mothur, but can also be used for other pipelines as needed. idtaxa: a fasta file and taxonomy file for IDTAXA.