Regions of the barley genome identified by GWAS as having significant associations with cellulose content.

This table includes just pop 3 and 5 as these were the two subpopulatons in which significant association with culm cellulose content were identified. Significant (−log10 p ≥ 3) marker-trait associations which pass the False Discovery Rate (FDR) adjusted p value threshold of ≤ 0.05 are indicated by *,
≤ 0.01 are indicated by **,
and ≤ 0.001 are indicated by ***
R-squared values for each marker are also included. The marker name and location for the SNP with the highest lod score is provided for each QTL. Germplasm included in the analysis was a subset of 2-rowed and 6- rowed spring accessions from the Barley CAP project. Subpopulations, referred to here as “Pop”, are those determined by STRUCTURE analysis based on degree of shared genetic ancestry. Barley Gene ID (MLOC), Morex Contig, 3rd internode FPKM—fragments per kilobase of exon per million fragments mapped from [39] are provided for each candidate gene identified under each peak where information is available. Four different versions of the barley map were used to provide information for each locus: 9K i-Select [35], Barley Genome Zipper [37], POPSEQ [38] and the IBSC [39]. Question marks indicate where no obvious candidate was identified for particular regions based on the available annotations.
Regions of the barley genome identified by GWAS as having significant associations with cellulose content.