Global Atlas of Immune Alleles Large Supplement

Large Supplemental Tables meant to accompany Global Atlas of Immune Alleles (GAIA). Table S17. ZENODO. Raw allele calls for the benchmarking set from Kourami for HLA genes. Raw allele calls from Kourami for 110 1kGP samples at 3 simulated sequencing depths used for HLA gold-standard benchmarking. Table S18. ZENODO. Raw allele calls for the benchmarking set from T1K for HLA genes. Raw allele calls from T1K for 110 1kGP samples at 3 simulated sequencing depths used for HLA gold-standard benchmarking. Table S19. ZENODO. Raw allele calls for the benchmarking set from HLA-LA for HLA genes. Raw allele calls from HLA-LA for 110 1kGP samples at 3 simulated sequencing depths used for HLA gold-standard benchmarking. Table S23. ZENODO. All novel allele calls and their counts. All novel allele calls generated by T1K for HLA genes, with observation counts. Table S31. ZENODO. GAIA allele frequencies with and without 1kGP children included (T1K - HLA). GAIA allele frequencies computed with and without the 1kGP trio children, for T1K HLA calls. Table S32. ZENODO. GAIA allele frequencies with and without 1kGP children included (T1K - IGHG). GAIA allele frequencies computed with and without the 1kGP trio children, for T1K IGHG calls. Table S33. ZENODO. GAIA allele frequencies with and without 1kGP children included (FCGR - Locityper). GAIA allele frequencies computed with and without the 1kGP trio children, for Locityper FCGR calls. Table S34. ZENODO. GAIA allele frequencies with and without 1kGP children included (HLA-LA - HLA). GAIA allele frequencies computed with and without the 1kGP trio children, for HLA-LA calls.