Code and processed data for: Kripal Singh, Chaeho Byun comment on Biotic resistance across a nutrient gradient in experimental wetland mesocosms

This record contains R scripts and processed datasets used to reproduce the analyses, tables, and figures reported in the manuscript “Biotic resistance across a nutrient gradient in experimental wetland mesocosms: Comment”. A README file inside the package provides run order and package requirements. No new raw data were generated; source data are available in the original archive cited in the manuscript. This record is the archival location for the code and processed data.<b>README.md</b>Replication guide describes file structure, required R packages, and the run order to reproduce analyses, tables, and figures reported in the manuscript.<b>typha_dominance_models.R</b>R script to fit dominance-structured statistical models and generate model outputs used in the manuscript (including coefficients and predicted values).<b>dominance_model_coefficients.csv</b>Model coefficient table exported from the dominance-structured models (output from typha_dominance_models.R) used for reporting results.<b>typha_tank_level_processed.csv</b>Processed tank-level dataset used as input for dominance-structured models (cleaned/derived from the original archive; analysis-ready format).<b>typha_taxon_biomass_processed.csv</b>Processed taxon/biomass dataset used for dominance and composition calculations; analysis-ready input for model scripts.<b>typha_dominance_index_by_tank.csv</b>Derived dominance index values calculated per tank from processed biomass/taxon data; used as predictor/response in dominance analyses.<b>predictions_mean_nutrient.csv</b>Predicted values at mean nutrient conditions used to reproduce the manuscript’s prediction panel(s); exported output for figure generation.<b>variance_partitioning_typeII.csv</b>Type-II/variance partitioning summary (percent explained by terms) used in the manuscript’s variance partitioning panel/table.<b>typha_site_context_models.R</b>R script for site-context / interaction models (e.g., site × competition and related terms) and associated summaries reported in the manuscript.<b>typha_misclassification_simulations.R</b>R script to run misclassification simulation scenarios and summarize impacts on key results; reproduces simulation outputs reported in Appendix S2/S3.<b>misclassification_simulation_results.csv</b>Results table from misclassification simulations (output from typha_misclassification_simulations.R), used for reporting/plots in the appendices.