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Mus musculus strain:R1 Raw sequence reads

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https://www.ncbi.nlm.nih.gov/sra/SRP323481
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We used SLAM-seq to study the global stability of transcripts in Caprin1 KO cells. Briefly, cells were 4sU-metabolic labeled for 24 h, followed by a chase with unlabeled uridine for 0, 0.5, 1, 3, 6, 12, and 24 h. Samples were then subjected to RNA extraction and thiol modification; the 4sU-containing transcripts were converted to C after reverse transcription and library construction. The mutations in each time point were integrated to calculate the half-life of each transcript.
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2022-07-01
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