Additional file 1 of A joint analysis using exome and transcriptome data identifies candidate polymorphisms and genes involved with umbilical hernia in pigs

Additional file 1: Table S1. Variants (SNPs and InDels) identified in the whole-exome and RNA sequencing that differed between normal and umbilical hernia-affected pigs, and their respective genotypes. Table S2. Total number of variants (SNPs and InDels) identified in the whole-exome sequencing that differed between normal and umbilical hernia-affected pigs and its annotation and consequence predicted with the VEP tool. Table S3. Total number of variants (SNPs and InDels) identified in the transcriptome analysis that differed between normal and umbilical hernia-affected pigs and its annotation and consequence predicted with the VEP tool. Table S4. Polymorphisms and genes associated to umbilical hernia in pigs annotated in the exome and transcriptome analyses. Table S5. GO biological process enriched in the DAVID (A) and Panther (B) databases based on the candidate genes identified for umbilical hernia through the analyses of the whole exome and RNA sequencing data. Fig. S1. Electropherogram of all five variants chosen to be validated with Sanger methodology