Genetic divergence between pairs of chimpanzee populations.

Notes: All data sets are restricted to the autosomes, and all estimates are given as a fraction of human-chimpanzee genetic divergence within the same alignment. For the 5-group alignments, we present in parentheses estimates correcting for recurrent mutation (calculated by EM analysis as described in Text S3). *The CBHOM data set adds to the 9 data sets that are the focus of most of this study. It consists of an alignment of chimpanzee-bonobo-human-orangutan-macaque, using the specialized alignment procedure described in Text S8. The estimate of chimpanzee-bonobo divergence is consistent with the other alignments.